PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT23985

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 413aa MW: 45916.9 Da PI: 5.0874

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23985	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	230	252	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OIT23985 230 YECKTCNRTFPSFQALGGHRASH 252 99**********99999998887 PP
2	zf-C2H2	13.6	0.00019	314	336	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OIT23985 314 HECSYCGAEFTSGQALGGHMRRH 336 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MDALEEVDVG CPNKDLFHIV KGKRTKRLRL SGVPCNNNNN NNNFEDGRDN GEGIACNNNN 60 NNMEDDSDNG EGVVACKNNN NNIEDGRDNG EGITCKNNNN NNIEDGSGNG EGVVACKNNN 120 NNIKDDSGNG EDVAYNNNNN NYSNPSSANS AEIFINTFTD EEEETAKSLI LMSKLSDDHP 180 RPLRFTLPPD NKVDFFNDDL RLYQTKFNSK RYIETSTNSA NGTKAGIYVY ECKTCNRTFP 240 SFQALGGHRA SHKKPKTIVT TELSNKKSTY FDFSDEDDYQ ELSPSTITLY KNNKNVTKTL 300 PNSSNNKFSS PRIHECSYCG AEFTSGQALG GHMRRHRGGV TVNSPLHLSN LSPATSIDQE 360 FGNNIMKKPR DGLSLDLNIP VSDDHLDPKF PVVSLNQQDQ EQTQRQQLVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MDALEEVDVG CPNKDLFHIV KGKRTKRLRL SGVPCNNNNN NNNFEDGRDN GEGIACNNNN  60
NNMEDDSDNG EGVVACKNNN NNIEDGRDNG EGITCKNNNN NNIEDGSGNG EGVVACKNNN  120
NNIKDDSGNG EDVAYNNNNN NYSNPSSANS AEIFINTFTD EEEETAKSLI LMSKLSDDHP  180
RPLRFTLPPD NKVDFFNDDL RLYQTKFNSK RYIETSTNSA NGTKAGIYVY ECKTCNRTFP  240
SFQALGGHRA SHKKPKTIVT TELSNKKSTY FDFSDEDDYQ ELSPSTITLY KNNKNVTKTL  300
PNSSNNKFSS PRIHECSYCG AEFTSGQALG GHMRRHRGGV TVNSPLHLSN LSPATSIDQE  360
FGNNIMKKPR DGLSLDLNIP VSDDHLDPKF PVVSLNQQDQ EQTQRQQLVD CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-43	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT23985