PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22547

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

AP2

Protein Properties

Length: 553aa MW: 61078.7 Da PI: 6.4689

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22547	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.4e-15	174	233	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g OIT22547 174 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 233 57*****************666664477446***********************98 PP
2	AP2	47.4	4.6e-15	278	327	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OIT22547 278 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 327 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MNSNNWLSFP LSPTHSSLPP HLQTTQSHHF TLGLVNETID NPFQNQEWNL MNTQGSNEVP 60 KVADFLGVNK SDENQSDLVH YNEIQSNDSD YLFQNNSLMP MQNALAPTGN YELQENACNI 120 QSLTLSMGSG KGSTSETSAS PSATTTVNAS ENSNTSIVEA APRRTLDTFG QRTSIYRGVT 180 RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGTSTTTNF 240 PISNYEKELE DMKHMTRQEF VAAIRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN 300 KDLYLGTFTT EEEAAEAYDI AAIKFRGLNA VTNFDMNRYD VKAILESNTL PIGGGAAKRL 360 KEAQALESSR KRDQEMIALN SSFQYGDSST SNNPLHAYPL LQQQPFSIES HQPLMTLQNQ 420 ESSHFHQSYL QTQLQLHPGA QTSHYDSSSH QFYNNYLQSN PVFLHGLMEN GGGSSSTGSY 480 STGGYFGNST GLGGISSNST SGNGVVGGGN GEEVALVKVD YDNMPVNGSN YNGWSGDSSV 540 QGSNPGVFSM WND

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MNSNNWLSFP LSPTHSSLPP HLQTTQSHHF TLGLVNETID NPFQNQEWNL MNTQGSNEVP  60
KVADFLGVNK SDENQSDLVH YNEIQSNDSD YLFQNNSLMP MQNALAPTGN YELQENACNI  120
QSLTLSMGSG KGSTSETSAS PSATTTVNAS ENSNTSIVEA APRRTLDTFG QRTSIYRGVT  180
RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY LGGYDKEEKA ARAYDLAALK YWGTSTTTNF  240
PISNYEKELE DMKHMTRQEF VAAIRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN  300
KDLYLGTFTT EEEAAEAYDI AAIKFRGLNA VTNFDMNRYD VKAILESNTL PIGGGAAKRL  360
KEAQALESSR KRDQEMIALN SSFQYGDSST SNNPLHAYPL LQQQPFSIES HQPLMTLQNQ  420
ESSHFHQSYL QTQLQLHPGA QTSHYDSSSH QFYNNYLQSN PVFLHGLMEN GGGSSSTGSY  480
STGGYFGNST GLGGISSNST SGNGVVGGGN GEEVALVKVD YDNMPVNGSN YNGWSGDSSV  540
QGSNPGVFSM WND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein

Link Out ? help Back to Top
Ensembl	OIT22547