PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21234

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 488aa MW: 54537.1 Da PI: 6.3718

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21234	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29	1.9e-09	150	172	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++ +tGtCkyG +CkF+H+ OIT21234 150 ADCAYYIKTGTCKYGFNCKFNHP 172 68********************8 PP
2	zf-CCCH	27.2	6.7e-09	199	221	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG++Ck+ H++ OIT21234 199 ECKYYLTEGGCKYGNTCKYYHSR 221 7********************95 PP
3	zf-CCCH	33.7	6e-11	243	266	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++ tG CkyG++C+F+H+ OIT21234 243 EKDCPYYMHTGSCKYGSNCRFHHP 266 679********************9 PP
4	zf-CCCH	31.4	3.2e-10	378	404	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +tG Cky + CkF+H++ OIT21234 378 PGQPDCSYFIKTGDCKYRSDCKFHHPK 404 5789*********************96 PP
5	zf-CCCH	37.3	4.6e-12	425	450	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f++r+G+Ck+G+ CkF H++ OIT21234 425 DQAVCSFYSRYGICKFGPACKFDHPE 450 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MEAIESQQHI QNLNDSTLEK QDLGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF 60 ICKELQGLVL NQAYIEERSQ GENHEENGRK KSENECGNNY YGGGDYTWSE NGNENENGVE 120 NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYIKTGT CKYGFNCKFN HPSRRRNQQW 180 AMEKGKQKDE SEERAGQIEC KYYLTEGGCK YGNTCKYYHS RRKGAISPVL NINFLGLPIR 240 TGEKDCPYYM HTGSCKYGSN CRFHHPDPST MAGVDPSSGY NNGGSAPVKS APYPTGSSWS 300 SPRALNETAS FVPVVYPASQ GIPPLSPQWN GYLAPVYPTS GKSLLTLPAF TIKDPATKTN 360 FYTRAQQPWL VEEYPERPGQ PDCSYFIKTG DCKYRSDCKF HHPKNQTSKT NMSVLNDKGL 420 PLRPDQAVCS FYSRYGICKF GPACKFDHPE HYDNSASSIG YAFDQPPFGN SATSYGSRWR 480 GKETEVAL

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MEAIESQQHI QNLNDSTLEK QDLGLDPQPL FSSDPSVQNP PQNLPDAVEN DDDDEIALQF  60
ICKELQGLVL NQAYIEERSQ GENHEENGRK KSENECGNNY YGGGDYTWSE NGNENENGVE  120
NENSDVAGSK QWGFNGNRRG LNHPLRPDAA DCAYYIKTGT CKYGFNCKFN HPSRRRNQQW  180
AMEKGKQKDE SEERAGQIEC KYYLTEGGCK YGNTCKYYHS RRKGAISPVL NINFLGLPIR  240
TGEKDCPYYM HTGSCKYGSN CRFHHPDPST MAGVDPSSGY NNGGSAPVKS APYPTGSSWS  300
SPRALNETAS FVPVVYPASQ GIPPLSPQWN GYLAPVYPTS GKSLLTLPAF TIKDPATKTN  360
FYTRAQQPWL VEEYPERPGQ PDCSYFIKTG DCKYRSDCKF HHPKNQTSKT NMSVLNDKGL  420
PLRPDQAVCS FYSRYGICKF GPACKFDHPE HYDNSASSIG YAFDQPPFGN SATSYGSRWR  480
GKETEVAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-108	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT21234