PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20066

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 363aa MW: 41612.4 Da PI: 6.5908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20066	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	202	221	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OIT20066 202 FSCPVCFKTFNRYNNMQMHM 221 89*****************9 PP
2	zf-C2H2	14.5	0.0001	286	308	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OIT20066 286 FMCRKCGKAFAVRGDWRTHEKNC 308 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKPPPNF LHNFYSTNYQ SSYPPPPPSP 60 PLKEALPLLS LSPIKHDRGD EVVVQEPVDC CTSTMDVDNK IKKSTDHNCD TKNDAAGEQE 120 EEENDENDVT VALHIGLPNP SAADLASILS SNRDEEEEET YHDHDNDVTN MNMNMNMINT 180 RLNKGQYWIP TPSQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP 240 TGMLRLPCYC CTPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD 300 WRTHEKNCGK LWYCVCGSDF KHKRSLKDHI KAFGQGHGAY GIDNFEEEED PASEVEQDNE 360 SIL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MTDPNYQPNF YHSQQQYWLK FNPNNTHHFP SSNSKPPPNF LHNFYSTNYQ SSYPPPPPSP  60
PLKEALPLLS LSPIKHDRGD EVVVQEPVDC CTSTMDVDNK IKKSTDHNCD TKNDAAGEQE  120
EEENDENDVT VALHIGLPNP SAADLASILS SNRDEEEEET YHDHDNDVTN MNMNMNMINT  180
RLNKGQYWIP TPSQILIGPT QFSCPVCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP  240
TGMLRLPCYC CTPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD  300
WRTHEKNCGK LWYCVCGSDF KHKRSLKDHI KAFGQGHGAY GIDNFEEEED PASEVEQDNE  360
SIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-137	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT20066