PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19503

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 540aa MW: 60434.3 Da PI: 5.7897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19503	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	350	395	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ Lr+llP+ +K +Ka++L ++eY++sL OIT19503 350 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYLSSL 395 68899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MDSIFFLEGG DRAVFLLRIM ESLGCTYICL WQYYQPSNCF MSLGGIYNGD SDVAQRLFQE 60 YRHSWLIMDS GRIPGLAFKN NVPYMELQFA DFQSHASNPV QLQFYQEAGI KTVICMGCSI 120 GEIEVGMTSS PQVNLEMGMT NLFAEYFSRQ AAAPAPAPKR GIPNQLLPID QNRPSSSSSF 180 SIDSPGEYSS LLFNVASTSP YVPEPPRTDT FSDQSIRPIP PVSATPTPYH QVIQTLNQTQ 240 GIQFPTVETE DAELTRAYLA VMTSPSSSSS SRQSRENLPT DYNQLATQKA TAFRRFRSGL 300 GLNLPITAAT TRRQNMVRRS INFFRNLNMM RSRQEQMQPN PRAPTSTQVH HMISERRRRE 360 KLNDSFQLLR SLLPPGTKKD KASVLASTTE YLSSLKTQVE ELSKKNEMLE AQLLDQPQNK 420 SSFEPINQAA VDAIISTFTG GSARVAVEMI NVGESTSESR IVDLQISVRR ECSILDLVTR 480 LLELLKSDND VNLESVAANT RSVVQSEPVT HITLRLRIEG SDWDESSFQE AVKRIVDDLA

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MDSIFFLEGG DRAVFLLRIM ESLGCTYICL WQYYQPSNCF MSLGGIYNGD SDVAQRLFQE  60
YRHSWLIMDS GRIPGLAFKN NVPYMELQFA DFQSHASNPV QLQFYQEAGI KTVICMGCSI  120
GEIEVGMTSS PQVNLEMGMT NLFAEYFSRQ AAAPAPAPKR GIPNQLLPID QNRPSSSSSF  180
SIDSPGEYSS LLFNVASTSP YVPEPPRTDT FSDQSIRPIP PVSATPTPYH QVIQTLNQTQ  240
GIQFPTVETE DAELTRAYLA VMTSPSSSSS SRQSRENLPT DYNQLATQKA TAFRRFRSGL  300
GLNLPITAAT TRRQNMVRRS INFFRNLNMM RSRQEQMQPN PRAPTSTQVH HMISERRRRE  360
KLNDSFQLLR SLLPPGTKKD KASVLASTTE YLSSLKTQVE ELSKKNEMLE AQLLDQPQNK  420
SSFEPINQAA VDAIISTFTG GSARVAVEMI NVGESTSESR IVDLQISVRR ECSILDLVTR  480
LLELLKSDND VNLESVAANT RSVVQSEPVT HITLRLRIEG SDWDESSFQE AVKRIVDDLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	355	360	ERRRRE
2	356	361	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-60	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT19503