PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT01881
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21150.2 Da    PI: 10.0797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT01881genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.2e-181656242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              +ien+ nrqvtfsk rn ++KKA+ELSv++daev +i+  +
  OIT01881 16 KIENQNNRQVTFSKCRNCVFKKANELSVMTDAEVGIIVCPQ 56
              79***********************************9755 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MSTRMIKGHR SARLAKIENQ NNRQVTFSKC RNCVFKKANE LSVMTDAEVG IIVCPQGSKP  60
YSFGHADVHE TINKYVGEER PSSPSSATID DKYVQKFRKV NSRELKTRLN SLQDQLDFEL  120
NLKSKLKKMN KNVESQQEWF KGPIKNMNYT EASMLKEGLE NLLLKVKNYG TERCYGYENG  180
KWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-18M-type_MADS family protein