PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS96290

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 370aa MW: 41954.2 Da PI: 8.3363

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS96290	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ q+G+g +W + + ++g++R++k+c++rw++yl OIS96290 14 KGPWSPEEDAKLKSYIDQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.4	2.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ OIS96290 69 GGFSQEEDNIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRAPCCDKN SVKKGPWSPE EDAKLKSYID QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSQEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRKNLRGKSQ KQGSRKGRDQ MNSSMDSLNN IDTNPSWSEF PILQSIPYSN DEPRYSNDHA 180 SIRKLLMKLG GKFYGVDDDK PMNGEPNPQY DPMGNSLRHP LYYNSINLMS YAPMGVMNTL 240 NSSFTNSHEY NVDGKAVCWG DTDTEKRKLG ERMGSDTSVV LTLNDGCNST IGLEHMAYSD 300 PHKLDGLEML HEDMLNNEPY TSLGGSLDWK DMNNLVFPFP PLVVSNNEGH QHRTLFEEGA 360 LNELRYPRDQ

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRAPCCDKN SVKKGPWSPE EDAKLKSYID QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSQEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRKNLRGKSQ KQGSRKGRDQ MNSSMDSLNN IDTNPSWSEF PILQSIPYSN DEPRYSNDHA  180
SIRKLLMKLG GKFYGVDDDK PMNGEPNPQY DPMGNSLRHP LYYNSINLMS YAPMGVMNTL  240
NSSFTNSHEY NVDGKAVCWG DTDTEKRKLG ERMGSDTSVV LTLNDGCNST IGLEHMAYSD  300
PHKLDGLEML HEDMLNNEPY TSLGGSLDWK DMNNLVFPFP PLVVSNNEGH QHRTLFEEGA  360
LNELRYPRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-72	MYB family protein

Link Out ? help Back to Top
Ensembl	OIS96290