PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G15970.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 296aa    MW: 32798.6 Da    PI: 4.6441
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G15970.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-1090136951
                      HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
         Homeobox   9 keqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51 
                      + ++e+Le+++  +++p   +r++L  ++    +++ +q+kvWFqNr
  OGLUM08G15970.3  90 PLEVEALERVYTDCPKPISVHRQQLLCECpilaNIEPKQIKVWFQNR 136
                      56789*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MSHSDVWLLI GYEDEPPEPE IEEEPENNNE DAVDDVVGAE DDREQEKTAR PWKTSKYMTK  60
YERASILGTR ALQISMNAPV MVELEWGTDP LEVEALERVY TDCPKPISVH RQQLLCECPI  120
LANIEPKQIK VWFQNRGYPG NPQGTPALSR LSPPDTLPDP PTVAAHHNGH GTSHENHTQE  180
SESSVEQHDP ESQDDISIKA TPADESPPEE TSAAPTKEQD FVDLAGSEQA AQTHAVGARL  240
KEGCHINRSL LTLTTVIREL RKAKCGLFVT HGVMPIAKID VGRSKLSSHK EAPMVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.13e-20HD-ZIP family protein