PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G08360.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CO-like

Protein Properties

Length: 289aa MW: 29172.2 Da PI: 5.3441

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G08360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.8e-06	16	58	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C ++ ++ +C + lC C + H H++vpl OGLUM08G08360.1 16 ACGVCGGA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58 6****9.*******************66899999999986 PP
2	CCT	66.7	6.3e-23	190	233	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a OGLUM08G08360.1 190 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 233 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MASDGSASPA SCGGAACGVC GGAATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV 60 AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAAVQGQGQG SPNDSSSSFT NDSAGGGAER 120 SLFDLLSDVD IMSCGGGGLA SSFDGAAAPP LWLHPGQLAA LTPWSPADSV VVPTSAAGAV 180 AAAAAAREER EERVRRYREK RKNRKFQKTI RYASRKAYAE ARPRIKGRFV KRATTAAASS 240 SSDDDSTAAA TEEAKFWLSF SDDGRADGVG FYMDSTTAAT AAYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	9e-15	CO-like family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G08360.1