PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM06G22000.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 448aa MW: 48659.3 Da PI: 7.3574

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM06G22000.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	279	298	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OGLUM06G22000.1 279 FSCPVCYKTFNRYNNMQMHM 298 89*****************9 PP
2	zf-C2H2	13.9	0.00016	363	385	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ OGLUM06G22000.1 363 FMCRKCGKAFAVRGDWRTHEKNC 385 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR 60 GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE ALPLLSLTPS 120 TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAAADDQAAE 180 VTVALHIGLP SPSPSDAAAA AGNQAAAAAA AEASAAGGGS SRMQVEEEGG EEEDEDEAAA 240 AAATATLPLG CASIGIGKLT KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG 300 HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGI 360 KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CACGSDFKHK RSLKDHIRAF GRGHAACGID 420 SFDDLDADDD PSSDLDHASA SASASRVG

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR  60
GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE ALPLLSLTPS  120
TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAAADDQAAE  180
VTVALHIGLP SPSPSDAAAA AGNQAAAAAA AEASAAGGGS SRMQVEEEGG EEEDEDEAAA  240
AAATATLPLG CASIGIGKLT KGQYWIPTPS QILIGPTQFS CPVCYKTFNR YNNMQMHMWG  300
HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCRNNIDHPR ARPLKDFRTL QTHYKRKHGI  360
KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CACGSDFKHK RSLKDHIRAF GRGHAACGID  420
SFDDLDADDD PSSDLDHASA SASASRVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM06G22000.1