PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G19920.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 297aa    MW: 32676.5 Da    PI: 5.3021
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G19920.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.82.6e-31101022102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl k++e++ed++++ ++sw  +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll
  OGLUM06G19920.1  10 FLVKTFEMVEDPATDAVVSWGgAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQRHLL 94 
                      9********************9899******************************************99.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                       +i+r+++
  OGLUM06G19920.1  95 ANIRRRRR 102
                      *****975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGVGAAVAPF LVKTFEMVED PATDAVVSWG GAARNSFVVW DPHAFAARLL PLHFKHANFS  60
SFLRQLNTYG FRKVSADRWE FANEDFLGGQ RHLLANIRRR RRGAGTGSTS PRTVNGGAGG  120
SEGEVERLRR DKEALARELA RLRRQQQEAR AQLLDMERRV RGTERRQEQC TAFLARALRS  180
PDVLDNIARR HAAAVERKKR RMLAAAADDD GLTFEALALA AAADTSHSTG GAVTTDMIWY  240
ELLGEEQAEI DIEVDQLVAS ASAAADTASE AEPWEEMGEE EVQELVQQID CLASPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-50HSF family protein