PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G39020.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 321aa    MW: 33457 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G39020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  OGLUM02G39020.1 114 YECKTCNKCFPTFQALGGHRASH 136
                      99**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPAQPPVL AAPAPAPPPP QPPVVVVKSE RYTSRKYTEA ATTADGVRAG FYVYECKTCN  120
KCFPTFQALG GHRASHKKPR LPGADDDNVN NVTNTNAIVV KSKPPLTTTT TPSAPSPPPP  180
QADAVVVPDV TTVLSLNNVA AAGSIINKLR VHECSICGAE FGSGQALGGH MRRHRPLHAP  240
PERAATTAAT TAATATAPDI KKEGSTSINL ELDLNLPAPS DEESVSPPPP PVLLALGGQF  300
NDGKKPILQL TASAALVGCH Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-23C2H2 family protein