PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G06690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 334aa MW: 35835 Da PI: 6.6087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G06690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.8e-13	230	276	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +K +iL +A eY+ksL+ OGLUM01G06690.1 230 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILNRAREYVKSLE 276 599********************95.....4999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MDSGGWIVHG YTNGATATGA GNHGFTCGYA ASSVGLINYD VQISMHLSMD DDDDQSAVYG 60 AAMVDDLLMP SPSTHHAVAA AAGSFPSSSS SSASFRSASV SYSPDTSSSA AAAAAATGFY 120 PELSSQVAPL LPPPPLVRNE PQHGRYTAGL PPPPPVTGGA FRRYARHLGP RRAPKPGACG 180 QRMFKTAMSA LAKMHMETTY MRRQYYYQQA AAAAAAEAAP PPLSGNNQLQ HTMSERKRRE 240 KLNDSFVALK AVLPPGSKKD KTSILNRARE YVKSLESKLS ELEEKNRELE ARLSTRPDDT 300 KNDEEEAAAP LEADGEVKRE DPVEIEALDN FFIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	240	ERKRRE
2	236	241	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-16	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G06690.1