PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GBG60398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 688aa MW: 72148 Da PI: 7.8648 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 25 | 49 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+ Cr+f++tGtC yG +Ck +H+ GBG60398.1 25 KQQDCRHFLQTGTCAYGRSCKHSHP 49 8899*****************9998 PP | |||||||
2 | zf-CCCH | 37.4 | 4.1e-12 | 89 | 115 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++a+tGtCk+G +CkF+H+p GBG60398.1 89 PGQPECPHYAKTGTCKFGISCKFHHSP 115 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 1e-12 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG+Ck+G +CkF+H++ GBG60398.1 155 GQKDCDYYMKTGQCKFGVSCKFNHPE 180 7889********************96 PP | |||||||
4 | zf-CCCH | 29 | 1.9e-09 | 475 | 498 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +Cr++ rtG CkyG +C+++H++ GBG60398.1 475 LECRYYVRTGACKYGMSCRYHHPK 498 58********************96 PP | |||||||
5 | zf-CCCH | 30.8 | 4.9e-10 | 533 | 558 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f+ r+G Ck+G +CkF H+ GBG60398.1 533 PGQPPCTFYVRNGDCKFGQTCKFDHP 558 5799*********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 688 aa Download sequence |
MEAGGALVGP SPRERIGDQC QQQQKQQDCR HFLQTGTCAY GRSCKHSHPI TGRAVFASLG 60 SFTSAERRRG EEQQQHQVRQ QPAQHPERPG QPECPHYAKT GTCKFGISCK FHHSPHLVRL 120 SPVAASTTFL LAAQSQAQRV GGVVLNGSRY PLRPGQKDCD YYMKTGQCKF GVSCKFNHPE 180 LIAASSRAPV YPPPSKPAVP IPVPTPTVSA GYQTAPGALG RSGPPAIPVS PVVFPVPVRP 240 VGLARFPPFS TQPGQAVPSG PGHVHCLVQH PGGIVYLPPG WNYQYVWPAP ADPTHLLSRP 300 QSHQVNSAPQ SQQQQQHAQP MSAGSAAGDG GSFFLPPRSH LPPPPRPPLS PPPAATSATV 360 SGPGGDSLAS GGLGVVRGGG TVIPVAGPVA PFAPSSNPGL LTANPNVNFM SKSTEMPPSL 420 PALPKAPYPP GMIGVQGIMP SSHNGPGGCT GVVLFPQLLP RNSAAAPFPE RPGQLECRYY 480 VRTGACKYGM SCRYHHPKDR KAAAMASGSG SSGAGPGTAA RCALNPMGFP LRPGQPPCTF 540 YVRNGDCKFG QTCKFDHPVG ELEYCPSASS LVDMPVAPLP ERSLAVAAEE ENGVVEATLH 600 KPKQEVKGQS TGGSSEVNRP DDEENGGDND DEDDDDEEDV EEHDLKGGRH QGGNGADSAL 660 KVTAEEVNSA PIQAVVIENS GLVSVGSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.2 | 6e-36 | C3H family protein |