PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY69382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 119aa MW: 13749.5 Da PI: 6.5115 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.8 | 4.4e-11 | 2 | 33 | 18 | 49 |
HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyey 49 +gi KKA EL +L++ e+av++fs++gk y++ GAY69382.1 2 AGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 33 69*****************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence |
MAGIYKKACE LVTLTGSEIA VVVFSQSGKP YTFGHHSVEA VANRFLGMNQ LPNDNVHSLV 60 VGHSQVRINE LNQQHNELRR QLDEEKEQEK MLTQMRRGKE TQPRWWETPV DEHNLQELL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-23 | M-type_MADS family protein |