PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY65224.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 480aa MW: 53781 Da PI: 7.2339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY65224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.7	2.2e-09	68	90	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f++rtG+Ck+G CkF+H+ GAY65224.1 68 EDCPFYLRTGYCKFGFCCKFNHP 90 89********************9 PP
2	zf-CCCH	25.8	1.9e-08	116	136	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+f++ tG Ck+G+ C+F H+ GAY65224.1 116 CKFYQSTGGCKHGEACRFKHS 136 ********************8 PP
3	zf-CCCH	18.2	4.6e-06	157	178	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f++ t Ck+G+ C+F+H++ GAY65224.1 157 CKFYQGTEGCKHGEACRFSHSM 178 999999**********85 PP
4	zf-CCCH	22.4	2.2e-07	210	231	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++ G CkyG++CkF+H++ GAY65224.1 210 CKYHLSAGGCKYGNTCKFSHSK 231 ********************95 PP
5	zf-CCCH	34.8	2.7e-11	261	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++r+G C yG C+F+H+ GAY65224.1 261 ECPFYMRNGSCAYGVDCRFNHP 282 7********************9 PP
6	zf-CCCH	37.9	2.9e-12	370	396	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC++f++tG Cky + CkF+H++ GAY65224.1 370 PGEPLCDYFMKTGNCKYRSACKFHHPK 396 589**********************96 PP
7	zf-CCCH	37.9	2.9e-12	443	469	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC++f++tG Cky + CkF+H++ GAY65224.1 443 PGEPLCDYFMKTGNCKYRSACKFHHPK 469 589**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MVDDDGWEDN AAGTWAEESC WSQKREQEEE LSKEFEKNVA LTEESYNPDG NGDSQGTKHE 60 YPSRPFAEDC PFYLRTGYCK FGFCCKFNHP VRGDFQGLKE NERGGFVGQH LGQIQCKFYQ 120 STGGCKHGEA CRFKHSIEKS EESKGEGLME KTVQIQCKFY QGTEGCKHGE ACRFSHSMEK 180 SENPLPFSGV NGMKESKGGS LVEMTGLIGC KYHLSAGGCK YGNTCKFSHS KEKPQTYIKK 240 SEKASPELNF LGLPIRVHEI ECPFYMRNGS CAYGVDCRFN HPDPVADEGS DHFNEASNPA 300 SRSWSPNIIS RKTVPNLDNH SFHPHWMLKS KFNSLQAKAE LPLSSPALGN LTKTADTSTY 360 HQFNEFPERP GEPLCDYFMK TGNCKYRSAC KFHHPKNGDG KSPGSVYPQA KAELALSSPA 420 LGNLTKTADT STYHQFNEFP ERPGEPLCDY FMKTGNCKYR SACKFHHPKN GDGKSPVCTW

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MVDDDGWEDN AAGTWAEESC WSQKREQEEE LSKEFEKNVA LTEESYNPDG NGDSQGTKHE  60
YPSRPFAEDC PFYLRTGYCK FGFCCKFNHP VRGDFQGLKE NERGGFVGQH LGQIQCKFYQ  120
STGGCKHGEA CRFKHSIEKS EESKGEGLME KTVQIQCKFY QGTEGCKHGE ACRFSHSMEK  180
SENPLPFSGV NGMKESKGGS LVEMTGLIGC KYHLSAGGCK YGNTCKFSHS KEKPQTYIKK  240
SEKASPELNF LGLPIRVHEI ECPFYMRNGS CAYGVDCRFN HPDPVADEGS DHFNEASNPA  300
SRSWSPNIIS RKTVPNLDNH SFHPHWMLKS KFNSLQAKAE LPLSSPALGN LTKTADTSTY  360
HQFNEFPERP GEPLCDYFMK TGNCKYRSAC KFHHPKNGDG KSPGSVYPQA KAELALSSPA  420
LGNLTKTADT STYHQFNEFP ERPGEPLCDY FMKTGNCKYR SACKFHHPKN GDGKSPVCTW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-53	C3H family protein