PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY62282.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 548aa MW: 61158.7 Da PI: 6.7891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY62282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	371	415	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka+ L + eY++sL GAY62282.1 371 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 415 8899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS 60 LARRFFHDYC QSFVPIVDYG SRLPGLAFKN GQQYIEVNAP ELQRLAFTES QRQFYQEARI 120 KTAVFMACKS GEIELGLCGG SQGNMEMEMR SLFQEDFKDQ QSPAAAGGRP IQSSSSSSLR 180 SLSMDSPSEY SSLLFNIPTS SHLSETLIDV VPNLQPLTTT TTAASTSTSI STTAGNTRTN 240 TSLQQAQQAM EAFAQLQNIQ LPIIQETEQD AMTRAILAVL TSPTSSSSSS QQQQQQQQQQ 300 EQPQQHLAPP KASAFKNYNL VLAPTSNIRA ISAFRGQSIL KRTISYYRRL NIARREYTAG 360 PSRPTSTQLH HMISERKRRE KLNESFHALR SLLPPGTKKD KASLLINTRE YLSSLKAQVD 420 ELSRRNQILE AQVLPKAREA AAAASVNAEE RVQVRVSPVA ESTSEWRMVD IRVIVRGECP 480 ALDLVIRILE FLKGDDNLSL ISVEANTQIA ADSTSFNHVI LRLRIQGNEW DESAFEEAVR 540 RVVGDLAH

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS  60
LARRFFHDYC QSFVPIVDYG SRLPGLAFKN GQQYIEVNAP ELQRLAFTES QRQFYQEARI  120
KTAVFMACKS GEIELGLCGG SQGNMEMEMR SLFQEDFKDQ QSPAAAGGRP IQSSSSSSLR  180
SLSMDSPSEY SSLLFNIPTS SHLSETLIDV VPNLQPLTTT TTAASTSTSI STTAGNTRTN  240
TSLQQAQQAM EAFAQLQNIQ LPIIQETEQD AMTRAILAVL TSPTSSSSSS QQQQQQQQQQ  300
EQPQQHLAPP KASAFKNYNL VLAPTSNIRA ISAFRGQSIL KRTISYYRRL NIARREYTAG  360
PSRPTSTQLH HMISERKRRE KLNESFHALR SLLPPGTKKD KASLLINTRE YLSSLKAQVD  420
ELSRRNQILE AQVLPKAREA AAAASVNAEE RVQVRVSPVA ESTSEWRMVD IRVIVRGECP  480
ALDLVIRILE FLKGDDNLSL ISVEANTQIA ADSTSFNHVI LRLRIQGNEW DESAFEEAVR  540
RVVGDLAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	380	ERKRRE
2	376	381	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-76	bHLH family protein