PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY61108.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 375aa MW: 42331.8 Da PI: 6.6096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY61108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	298	320	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ GAY61108.1 298 FMCRKCGKAFAVRGDWRTHEKNC 320 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MADPYSNFFS GLLKFNNSPN QNYQHYPASQ QRHFAQTNTF AFNQNQSHHP YYFQYQSSPP 60 SPPLREALPL LSLSPRRHEE EAEEEEEEEE EHHQHSCNIA EAAAAMDVDK NKGKLVEESN 120 LFFSSTSSTA TAALHHEDDD ETTAVTVALH IGLPSPSASE MASLLSSSSE ISGHDHNGDH 180 GGDDSSAGYP FNRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY 240 RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC 300 RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE 360 DEPASEVEQD NESMQ

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MADPYSNFFS GLLKFNNSPN QNYQHYPASQ QRHFAQTNTF AFNQNQSHHP YYFQYQSSPP  60
SPPLREALPL LSLSPRRHEE EAEEEEEEEE EHHQHSCNIA EAAAAMDVDK NKGKLVEESN  120
LFFSSTSSTA TAALHHEDDD ETTAVTVALH IGLPSPSASE MASLLSSSSE ISGHDHNGDH  180
GGDDSSAGYP FNRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY  240
RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC  300
RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE  360
DEPASEVEQD NESMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-135	C2H2 family protein