PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY58889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 184aa MW: 21098.6 Da PI: 4.9107 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 103 | 124 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++++rtG C++G +CkF+H+ GAY58889.1 103 DCSYYLRTGRCRFGMSCKFNHP 124 6********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MLKLISESYI PSKWIFLIHP FDSNVNEENR YYTQLSLPPN SDLDPPPLDM QNLDIEDPED 60 QVDSDTEEEV ENVDKNNKQV DEVTGNQMTR RKFCYPQRPG VHDCSYYLRT GRCRFGMSCK 120 FNHPVPRQIQ SLNQSINSNT VSIEMNPNNS ANSNRMSTGK GKKGKSCMEM EEDTLVLLSI 180 AKSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-13 | C3H family protein |