PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY54490.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 383aa MW: 42083.2 Da PI: 6.9405

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY54490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GAY54490.1 148 YECKTCNRTFPSFQALGGHRASH 170 99**********99999998887 PP
2	zf-C2H2	12.9	0.00033	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GAY54490.1 255 HECSICGAEFTSGQALGGHMRRH 277 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEEAQEEVLM INSSNKDQQS HNNNIVKGKR TKRQRPQSPV PFVVNGTIHD NTNLSSSPAV 60 SSAEEFFDST EEDEDMANCL ILLAQCQSTR ESPPKPKPAH YDVHEQEEIA QLQINNNVNN 120 SGMKFNSRRF LEAPGTGTGT GKGGCYVYEC KTCNRTFPSF QALGGHRASH KKPKAMLMND 180 DRLSLKSQHQ QQQQQQFLVS KSDDEEEDGN FRNVSSLSLQ LSNNNRGHNN NNNNSSFYSG 240 NINNGVVKGN SSKVHECSIC GAEFTSGQAL GGHMRRHRSA PVAATAAAMA TTNTTLSLTP 300 MAVVEAGQDQ PRKSSSSSSS SRNNLLSLDL DLNLPAPEDD PKESKLPFSS KQQQQQQQQQ 360 QPQQQQKSSL VFTAAAALVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEEAQEEVLM INSSNKDQQS HNNNIVKGKR TKRQRPQSPV PFVVNGTIHD NTNLSSSPAV  60
SSAEEFFDST EEDEDMANCL ILLAQCQSTR ESPPKPKPAH YDVHEQEEIA QLQINNNVNN  120
SGMKFNSRRF LEAPGTGTGT GKGGCYVYEC KTCNRTFPSF QALGGHRASH KKPKAMLMND  180
DRLSLKSQHQ QQQQQQFLVS KSDDEEEDGN FRNVSSLSLQ LSNNNRGHNN NNNNSSFYSG  240
NINNGVVKGN SSKVHECSIC GAEFTSGQAL GGHMRRHRSA PVAATAAAMA TTNTTLSLTP  300
MAVVEAGQDQ PRKSSSSSSS SRNNLLSLDL DLNLPAPEDD PKESKLPFSS KQQQQQQQQQ  360
QPQQQQKSSL VFTAAAALVD CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-40	C2H2 family protein