PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50983.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 457aa MW: 51060.5 Da PI: 4.4877

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.2e-12	182	206	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ GAY50983.1 182 GEKECPYYMRNGSCKYGANCRFNHP 206 6789********************9 PP
2	zf-CCCH	28.3	2.9e-09	345	371	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Cky ++Ck++H++ GAY50983.1 345 PGQPECSYFLRTGDCKYKSNCKYHHPK 371 5789*********************96 PP
3	zf-CCCH	33.4	7.5e-11	392	416	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+Ck+G+ Ck+ H+ GAY50983.1 392 GQNVCSYYSRYGICKFGPACKYDHP 416 6678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI 60 DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP 120 VRPDAQDCTF YMKTVSSFFC LPFVGFKSSK EKVKEREELI ERPGQSQSQG QSESQSQIEC 180 KGEKECPYYM RNGSCKYGAN CRFNHPDPTA VGGSDSPSGY GNGGSVSSQA PSQASIGSWS 240 SPRALNEPAP FVPMMYSPTP GVPSQNSEWN GYQVVALLLL CSFNYLSNRF LIGLICLWHV 300 KSPLYPQERS VQSAPTYVIN NNPLVDNVQI IHQPQMLVDE FPERPGQPEC SYFLRTGDCK 360 YKSNCKYHHP KNRIPKSPPC TLSDKGLPLR PGQNVCSYYS RYGICKFGPA CKYDHPIHSD 420 ASAEYGLDPP PSFGDSTTRQ ETGMAGTGNG NGSDKNI

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MELSELISVP NLNHEKTKFE LGLQSSSPKS DLDPPPSDLD YTAGIEEELR NLDLREAEEI  60
DSIKAAEIEI VVEEEDEEEE EEEEEESESD ENNKSNIIVQ NEIQNENEYG NQMRKRYPYP  120
VRPDAQDCTF YMKTVSSFFC LPFVGFKSSK EKVKEREELI ERPGQSQSQG QSESQSQIEC  180
KGEKECPYYM RNGSCKYGAN CRFNHPDPTA VGGSDSPSGY GNGGSVSSQA PSQASIGSWS  240
SPRALNEPAP FVPMMYSPTP GVPSQNSEWN GYQVVALLLL CSFNYLSNRF LIGLICLWHV  300
KSPLYPQERS VQSAPTYVIN NNPLVDNVQI IHQPQMLVDE FPERPGQPEC SYFLRTGDCK  360
YKSNCKYHHP KNRIPKSPPC TLSDKGLPLR PGQNVCSYYS RYGICKFGPA CKYDHPIHSD  420
ASAEYGLDPP PSFGDSTTRQ ETGMAGTGNG NGSDKNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-86	C3H family protein