PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY50127.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 677aa MW: 74988.3 Da PI: 6.6183

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY50127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39	2e-12	328	384	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g GAY50127.1 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 384 78*****************87776664446655.77****************98 PP
2	AP2	46.4	9.8e-15	427	478	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GAY50127.1 427 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 478 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MKSMNNDDTN NNNINNDNWL GFSLSPDIKM EVPQDPHPQT QPSSPSTSAV MPPPSVPSSL 60 FQCLPYGFYY GFEGENSSLY SPLPVMPLKS DGSLCIMEAL SRSQQPQGMV STTATTTSTP 120 KLEDFFGGAT MGTHHYESND REAMALSLDS MYYHHNPENE PSSQNCLNQL EENSRHQQQQ 180 IQDQQYQYYT TGFRGHEMLL GDKGKEIQVA DCNLQLPAMA DDGMHGMKNW VSRNYATEQA 240 MQQKLLGCMS HNGGESGDIS AMPYGDLQSL SLSMSPASQS SCVTGSQQVS HAVSNCAAVE 300 RKKRGSEKMD QKQVAHRKSL DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG 360 RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQKEL EEMKNMNRQE YVAHLRRKSS 420 GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVT 480 AVTNFDITRY DVERIMASSN LLAGELARRN KEMGPGNDAP NQNPSAHTGN GDLILSQKDN 540 ESDPPDWKLV SYQSSQQLEH KAPNMSIINN YNAHLFSLAP DSVIAMDAMG SAQQEVESSA 600 KMGNHLSNAS SLVTSLSSSK EGSPDGSSVP IPFVMPRTAS KLLTSPTNTV NSWIPSAELR 660 PALSVPHMPV FAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MKSMNNDDTN NNNINNDNWL GFSLSPDIKM EVPQDPHPQT QPSSPSTSAV MPPPSVPSSL  60
FQCLPYGFYY GFEGENSSLY SPLPVMPLKS DGSLCIMEAL SRSQQPQGMV STTATTTSTP  120
KLEDFFGGAT MGTHHYESND REAMALSLDS MYYHHNPENE PSSQNCLNQL EENSRHQQQQ  180
IQDQQYQYYT TGFRGHEMLL GDKGKEIQVA DCNLQLPAMA DDGMHGMKNW VSRNYATEQA  240
MQQKLLGCMS HNGGESGDIS AMPYGDLQSL SLSMSPASQS SCVTGSQQVS HAVSNCAAVE  300
RKKRGSEKMD QKQVAHRKSL DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG  360
RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQKEL EEMKNMNRQE YVAHLRRKSS  420
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVT  480
AVTNFDITRY DVERIMASSN LLAGELARRN KEMGPGNDAP NQNPSAHTGN GDLILSQKDN  540
ESDPPDWKLV SYQSSQQLEH KAPNMSIINN YNAHLFSLAP DSVIAMDAMG SAQQEVESSA  600
KMGNHLSNAS SLVTSLSSSK EGSPDGSSVP IPFVMPRTAS KLLTSPTNTV NSWIPSAELR  660
PALSVPHMPV FAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-135	AP2 family protein