PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY47209.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 535aa MW: 59119.6 Da PI: 6.1189

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY47209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.6	2.2e-11	169	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g GAY47209.1 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225 57*****************5444.2455536655.779999************98 PP
2	AP2	35.3	2.9e-11	262	306	8	55
AP2 8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g GAY47209.1 262 RHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 306 7899*****988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MNTNNWLSFP LSPTHASLPA QLHTSQSHQF NLGLVNDGMD NPFQGQEWNL INTHGSGEVP 60 KVADFLGVSK SDNQSDLVDF NEIQANDQSD YLFQNNSIVP VQNTIVAAST GTYEFQENTN 120 NLQSLTLSMG SGNNKGSSST CETSGENSTS IVEAAAPRRT LDTFGQRTSI YRGVTRHRWT 180 GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPIGNYEKE 240 LEEMKHMTRQ EFVASIRRSS SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA 300 AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGGAAKRLK EAQALETSRR REEMIALGSS 360 FQYGSSSSSR LQAYPLMQTT PFEQPQPPLL NLQNQEISQY TQDPSFHQSY IQTQLQLHHQ 420 QQSAGSNYLQ QSSQNSHFYN TYLQNNPGLL HGLVNMGSNS SSVIDNNGSS SGSYSTGGYI 480 GNGGIGMTLN SSTGTAAEEL GMVKVDYDMP SGGYTNWSGD SVQGTNAGFF TMWND

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MNTNNWLSFP LSPTHASLPA QLHTSQSHQF NLGLVNDGMD NPFQGQEWNL INTHGSGEVP  60
KVADFLGVSK SDNQSDLVDF NEIQANDQSD YLFQNNSIVP VQNTIVAAST GTYEFQENTN  120
NLQSLTLSMG SGNNKGSSST CETSGENSTS IVEAAAPRRT LDTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPIGNYEKE  240
LEEMKHMTRQ EFVASIRRSS SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA  300
AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGGAAKRLK EAQALETSRR REEMIALGSS  360
FQYGSSSSSR LQAYPLMQTT PFEQPQPPLL NLQNQEISQY TQDPSFHQSY IQTQLQLHHQ  420
QQSAGSNYLQ QSSQNSHFYN TYLQNNPGLL HGLVNMGSNS SSVIDNNGSS SGSYSTGGYI  480
GNGGIGMTLN SSTGTAAEEL GMVKVDYDMP SGGYTNWSGD SVQGTNAGFF TMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein