PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY44293.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 538aa MW: 59209.1 Da PI: 5.0763

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY44293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	190.6	1.1e-58	213	529	2	289
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd.........pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +e L+++Ae+++s++l+ aq +Larl++ ++ g+ p+qR+a +f+eAL++ l++ ++l + + ++s+ + ++++ a+k+f +sPi+ GAY44293.1 213 IEELIRAAECLDSNELQVAQMILARLNHSQNLVGSppvvvaagkPLQRAAIFFKEALSSLLLSLLNGLTRPTSHLSSSWPEIIQSVRAYKAFTAISPIP 311 679***********************9776665566666666***********************9999999999************** PP GRAS 92 kfshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 f+h+t+ qa+le++ + +H+iDfdi+ G+Q++++++++a+++ + + slRiT+v++ + +e++ ++ +L +fA+el++ ++ GAY44293.1 312 MFTHFTTTQALLESLFLDrgsgspPLIHVIDFDIGFGGQYASFMREIADKAaaarhsNYSTSLRITAVVP--DDYVTETRLVKANLVQFARELRIGLHV 408 *********98544344667899*****************9996655544588*****..45999****************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlld.esvsleserdevLklvkslsPkvvvvveqe..adhnse.....sFlerflealeyysalfd 269 +++ a+++e+l++++ ++ gE+laV l+ ++r l +s++ + + +++ ++++sP+vvv++++e d +s+ sF + f+ +leyy+++f+ GAY44293.1 409 DFVPARSFEMLSFKAVKLMDGEKLAVLLSPTVFRRLGgNSTDNAAAVAAFVTDIRRISPNVVVFTDNEawGDFGSGttapfSFRRNFVTSLEYYTMVFE 507 9999********************99998877514444455899****************55344555677889************* PP GRAS 270 sleaklpres..eerikvErel 289 sl+a +++ + ++++k+E ++ GAY44293.1 508 SLDAAAAAMNagDWARKIEDAF 529 88777666678888888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MRVPLKSQQN SQSQQSPERV SSPNNNNINI INSVNVIARS IGGISNNNNN IHSRRPNTTN 60 NINITSPANS GSKCYEPTSV LELRRSPSPI PEWDRDEHML RTMDWESFIK DLGGLDDDCS 120 SDVAAPQLQI QHLHPISTDD DSIDHQQQSD FNFNFSSNFN VPAADDVVSL SSSTTQYHNN 180 FPDHHPDAVS NNGNNMIVMN NLGGGFEFDY NYIEELIRAA ECLDSNELQV AQMILARLNH 240 SQNLVGSPPV VVAAGKPLQR AAIFFKEALS SLLLSLLNGL TRPTSHLSSS WPEIIQSVRA 300 YKAFTAISPI PMFTHFTTTQ ALLESLFLDR GSGSPPLIHV IDFDIGFGGQ YASFMREIAD 360 KAAAARHSNY STSLRITAVV PDDYVTETRL VKANLVQFAR ELRIGLHVDF VPARSFEMLS 420 FKAVKLMDGE KLAVLLSPTV FRRLGGNSTD NAAAVAAFVT DIRRISPNVV VFTDNEAWGD 480 FGSGTTAPFS FRRNFVTSLE YYTMVFESLD AAAAAMNAGD WARKIEDAFA SAEDYGGC

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MRVPLKSQQN SQSQQSPERV SSPNNNNINI INSVNVIARS IGGISNNNNN IHSRRPNTTN  60
NINITSPANS GSKCYEPTSV LELRRSPSPI PEWDRDEHML RTMDWESFIK DLGGLDDDCS  120
SDVAAPQLQI QHLHPISTDD DSIDHQQQSD FNFNFSSNFN VPAADDVVSL SSSTTQYHNN  180
FPDHHPDAVS NNGNNMIVMN NLGGGFEFDY NYIEELIRAA ECLDSNELQV AQMILARLNH  240
SQNLVGSPPV VVAAGKPLQR AAIFFKEALS SLLLSLLNGL TRPTSHLSSS WPEIIQSVRA  300
YKAFTAISPI PMFTHFTTTQ ALLESLFLDR GSGSPPLIHV IDFDIGFGGQ YASFMREIAD  360
KAAAARHSNY STSLRITAVV PDDYVTETRL VKANLVQFAR ELRIGLHVDF VPARSFEMLS  420
FKAVKLMDGE KLAVLLSPTV FRRLGGNSTD NAAAVAAFVT DIRRISPNVV VFTDNEAWGD  480
FGSGTTAPFS FRRNFVTSLE YYTMVFESLD AAAAAMNAGD WARKIEDAFA SAEDYGGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	2e-86	GRAS family protein