PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY42987.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 221aa MW: 25873.6 Da PI: 10.0873

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY42987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvtfskRrng++KKA+EL vLCda+v++i+ sstgk++ey GAY42987.1 9 KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYV 58 79***********************************************7 PP
2	K-box	74.3	3.4e-25	71	166	1	96
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 yq++ + +l+++++e++q++l++Lk+ + nL++e+R++lGe+L++Lslk L Leq++++ l+ iR++K + + qi + +kk ++ +een++Lr+ GAY42987.1 71 YQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHKKKVRREEEENRKLRN 166 56666778**************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MARGKIQIKR IENATNRQVT FSKRRNGLFK KAQELTVLCD AKVSIIMCSS TGKVQEYVSS 60 STTTKQLLDE YQRRLKIDLW SSQYEKMQEN LKNLKEVNIN LKKEIRQRLG ESLNDLSLKK 120 LSDLEQDVDN CLRIIRERKL RAISGQIVTH KKKVRREEEE NRKLRNGFII NAKEEDQHYE 180 LVDNEGHYDS VIRFQNGGPG IFALRLQPNE PLSSQWMSIH E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-65	MIKC_MADS family protein