PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42949.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 942aa    MW: 104491 Da    PI: 5.228
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.81.5e-21114244199
                 EEEE-..-HHHHTT-EE--HHH.HTT...................................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................................ggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                 f+k+lt sd++++g +++p++ ae+                                     ++++ s++l+++d++ ++W++++iyr++++r++lt+G
  GAY42949.1 114 FCKTLTASDTSTHGGFSVPRRAAEKLfpplvglnsvkwiilqpvvdytysclhiallfqdyTMQPP-SQELVVRDLHDNTWTFRHIYRGQPKRHLLTTG 211
                 99*********************999*****99999999999999999999888888888844444.469***************************** PP

                 HHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  65 WkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 W+ Fv +++L++gD+v+F   ++++ +l+v+v+r+
  GAY42949.1 212 WSLFVGSKRLRAGDSVLFI--RDEKSQLMVGVRRA 244
                 *******************..4577778*****97 PP
2Auxin_resp115.54.7e-38269352183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaas++s F+++YnPra++s+Fv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  GAY42949.1 269 AAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYgTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 352
                 79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    
MGSVEEKIKA GGLVIRAQTT LLEEMKLLKE MQDQSGARKA INSELWHACA GPLVFLPQVG  60
SLVYYFPQGH SEQADKDTDE IYAQMSLQPV NSEKDVFPIP DFGLKPSKHP SEFFCKTLTA  120
SDTSTHGGFS VPRRAAEKLF PPLVGLNSVK WIILQPVVDY TYSCLHIALL FQDYTMQPPS  180
QELVVRDLHD NTWTFRHIYR GQPKRHLLTT GWSLFVGSKR LRAGDSVLFI RDEKSQLMVG  240
VRRANRQQTA LPSSVLSADS MHIGVLAAAA HAASNRSQFT IFYNPRACPS DFVIPLAKYR  300
KSVYGTQMSV GMRFGMMFET EESGKRRYMG TIVGISDLDP LRWPGSKWRN LQVEWDEPGC  360
SDKQKRVSPW EIETPESLFI FPSLTSGLKR PFHSGILATE TEWGSLIKRP LACPEIVPGV  420
MPYSSISNLC SEQLIKMMLK PQLVNNPGSF AASSLQETSG AKGAHLEEVK TLQSTINQKP  480
RLVPSEMNRI DNQNCSQICL NQADTVNSSL SRINIPEKPH PPSKCEMQAP PGMNTDHLKS  540
EPRQSIEQSS NLTSAADCSM EKPSGPLNPQ NLVNQHAFHN QNEGLPQLQS SWPMQSQLES  600
VFQAQQINVP QSDSTAHSGS LPILDTDEWM SHTSCNSLAG TYNRSPGPLL MFGLQEPSTM  660
LPEVINPSLS FPGQEMWDHQ PNNLRFLSPV DPLTSFTQQD HCSLNSSGLR DLSDESNNQS  720
GIYSCLNIDV SNGGSTMIDH SVSSAILDEF CTLKDANFQN PPDCLMNTFS SSQDVQSQIT  780
SASLADSQAF SRQDFPDNSG GTSSSNVDFD ESSLLQNTSW QPVVPPMRTY TKVQKTGSVG  840
RSIDVTNFKN YDELCSAIER MFGLEGLLND PRGTEWKLVY VDYENDVLLV GDDPWEEFVG  900
CVRCIRILSP QEVEQMSEEG MKLLNSAAMQ GIDCTKPEGG RA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein