PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY42747.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 577aa    MW: 64574.5 Da    PI: 7.12
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY42747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2952e-902075762374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 ++ Ll++A++++s++l+laq +Larl+++ +sp+g+p+qR+a++f+eAL++ l + +  ++       +s+ + ++++ a+k+fs +sPi+ f+h+t+ 
  GAY42747.1 207 IQELLRAADCFDSNELRLAQIILARLNQRlRSPAGKPLQRAAFFFKEALNSLLKGLTRPIC------LSSWPEIIQSVRAYKAFSGMSPIPMFTHFTTT 299
                 689*************************99************************9443333......34444599************************ PP

        GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg.........ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                 qa+le++eg+    +HiiDfdi+ G Q++++++++a+++++         p slRiT+++s++    +e++ ++++L +fA+el+++f+ ++l+ +++e
  GAY42747.1 300 QALLESLEGSpvPLIHIIDFDIGFGSQYASFMREIAEKAHQyhsgsklmnPTSLRITAIVSED--YVNETRLIKDNLVHFAQELRIRFHVDFLLLRTFE 396
                 **********9999************************94445556777688*********55..999999**************************** PP

        GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseeri 283
                 +l++++ ++  gE++ V l+  ++r l++s++ +    ++++ ++++sP+vvv++++e  a++ + + F + f+++leyy+++f+sl+a + ++ ++++
  GAY42747.1 397 MLSFKAVKFMDGEKTSVVLSPTIFRRLANSTNNAV---AFVNDLRRISPTVVVFTDNEawAECgTVPLFRRNFVNSLEYYTMVFESLDAAAMNARDWAR 492
                 ***************************77776666...9*******************77778455578889*****************999999**** PP

        GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 k+E  ll+++i+ +v ++ga+       ++ Wre ++ aG++pv+ls++a   a++ll+kv++ g++v +++++lvl+W++ +Lv++SaWr
  GAY42747.1 493 KIETYLLRPKITAAVEAAGAR-------VAPWREVFSGAGMRPVQLSQFADFLAECLLAKVQVGGFHVAKRQAELVLCWHQWALVATSAWR 576
                 ********************8.......89************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MRVPVKSPQN SQSQSPKRVS SNNNINSVNV IARNIGIRSR PNSSNKCYEP TSVLELRRSP  60
SPVAENEKPA TVASACATEI SANISSDPSI EWEEHVLRTM DWESAMKDLG LDDYYSSVPS  120
NPTTSDPDPH LQIRQNLTLT DSVHLLDQSY FNFNIPDICP SSSQHDQGFI VGNNFSPVDV  180
SSNSLVINAS SATGTNIVNV GFEFDFIQEL LRAADCFDSN ELRLAQIILA RLNQRLRSPA  240
GKPLQRAAFF FKEALNSLLK GLTRPICLSS WPEIIQSVRA YKAFSGMSPI PMFTHFTTTQ  300
ALLESLEGSP VPLIHIIDFD IGFGSQYASF MREIAEKAHQ YHSGSKLMNP TSLRITAIVS  360
EDYVNETRLI KDNLVHFAQE LRIRFHVDFL LLRTFEMLSF KAVKFMDGEK TSVVLSPTIF  420
RRLANSTNNA VAFVNDLRRI SPTVVVFTDN EAWAECGTVP LFRRNFVNSL EYYTMVFESL  480
DAAAMNARDW ARKIETYLLR PKITAAVEAA GARVAPWREV FSGAGMRPVQ LSQFADFLAE  540
CLLAKVQVGG FHVAKRQAEL VLCWHQWALV ATSAWRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-160GRAS family protein