PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY41664.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 314aa MW: 35389.5 Da PI: 5.2115

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY41664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.1	4.8e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s GAY41664.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	27.1	1.8e-10	92	161	10	79
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + ++ e+lqqe+ +L++++++ + ++R + + L s+k++++ e++L + l+++ ++K+ ll ++++ GAY41664.1 92 DIQNKEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 161 568899**********************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEELQ QEVGRLQQQL QMAEDQIRIY 120 EPDPLRITSI KDIESCEKNL VDTLTQVSQR KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV 180 VGWLPGGGHN QAQIFESSAS LNELRDLSTT MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN 240 FATWPQAYVS AGLHSAPLSP SLYPQIQQHG MMGTDTNEIL PREQVEIPIN APHVQADNEG 300 ANYDQNKIPQ VNGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-108	MIKC_MADS family protein