PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39341.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1005aa MW: 111104 Da PI: 5.1473

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	598	648	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GAY39341.1 598 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 648 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence
PQPKPGIMPE PDEENQTRYM PPAPPRTKEV TFMASSIMDV DVVDLDLDNP WPSDQMGFVS 60 NPMSPFLISE QPCSPLWAFS DADNDDKLSG HVNYPLFLKC NPNSETENPK DNDENRRFPS 120 PLSALMPLEN PDGYCMIKER ITQALRYFKD STEQHVLAQV WVPVKVGGRY VLTTSGQPFV 180 LDPHSNGLHQ YRMVSLMYMF SVDGESDGEL GLPGRVFWQK LPEWTPNVQY YSSKEYSRLD 240 HALHHNVRGT MALPVFEPSG QSCVAVIELI MTSQKINYAP EVDKVCKALE AVNLKSSEIL 300 DYPSTQICNE GRQNALAEIL EILSVVCETH KLPLAQTWVP CRHRSVLAYG GGLKKSCSSI 360 DGSCMGQVCM STTDVAFYVV DGHMWGFREA CVEHHLQKDQ GVAGRAFFSL SSCFCKDITQ 420 FCKTEYPLVH YARMFGLTSC FAICLRSTYT GDDDYILEFF LPPAITDSYE QQTLLGSILA 480 TMKQHFQSLK VASGIDLEDD EGTIEIIEGE ATADKKLNLR MESIRIPQSV RSPPQPHALP 540 NGGELGQLDI PEQQLMENFD YMNSRGNAVN VGGNDNPVSL LENKNTRKLS ERKRGKTEKS 600 ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLTKLKRVIE 660 SVQGTNGTFG LTSLTTSPLP VAVNSISWPS GLNGSNQQNS PNSKPELLGE KILSPIYKTP 720 GSDGHTELED RLSGGRMSTH EEHIHEQNAL SPEIGKGKNS PKTGSGSREE SDGSPTSHGS 780 CQGNPANESA PAKDVLVSSI HEPRFKVGGS LELVFQPVGE MNLSAAFSIP DALVTTEPQE 840 PFGGLLVEDA GSSKDLRNLC PAVADAIVDE RLPENSCANL PCAELSPKQH LATLSQTMPR 900 VYSRQEMKSV TIKATYREDI IRFRISLSCG ILELKEEVAK RLKLELGTFD IKYLDDDQEW 960 VLIACDADLQ ECLDISRSSG SNMIRLSIHD IMANLGSSCE STGEL

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence

PQPKPGIMPE PDEENQTRYM PPAPPRTKEV TFMASSIMDV DVVDLDLDNP WPSDQMGFVS  60
NPMSPFLISE QPCSPLWAFS DADNDDKLSG HVNYPLFLKC NPNSETENPK DNDENRRFPS  120
PLSALMPLEN PDGYCMIKER ITQALRYFKD STEQHVLAQV WVPVKVGGRY VLTTSGQPFV  180
LDPHSNGLHQ YRMVSLMYMF SVDGESDGEL GLPGRVFWQK LPEWTPNVQY YSSKEYSRLD  240
HALHHNVRGT MALPVFEPSG QSCVAVIELI MTSQKINYAP EVDKVCKALE AVNLKSSEIL  300
DYPSTQICNE GRQNALAEIL EILSVVCETH KLPLAQTWVP CRHRSVLAYG GGLKKSCSSI  360
DGSCMGQVCM STTDVAFYVV DGHMWGFREA CVEHHLQKDQ GVAGRAFFSL SSCFCKDITQ  420
FCKTEYPLVH YARMFGLTSC FAICLRSTYT GDDDYILEFF LPPAITDSYE QQTLLGSILA  480
TMKQHFQSLK VASGIDLEDD EGTIEIIEGE ATADKKLNLR MESIRIPQSV RSPPQPHALP  540
NGGELGQLDI PEQQLMENFD YMNSRGNAVN VGGNDNPVSL LENKNTRKLS ERKRGKTEKS  600
ISLEVLQQYF AGSLKDAAKS LGVCPTTMKR ICRQHGISRW PSRKINKVNR SLTKLKRVIE  660
SVQGTNGTFG LTSLTTSPLP VAVNSISWPS GLNGSNQQNS PNSKPELLGE KILSPIYKTP  720
GSDGHTELED RLSGGRMSTH EEHIHEQNAL SPEIGKGKNS PKTGSGSREE SDGSPTSHGS  780
CQGNPANESA PAKDVLVSSI HEPRFKVGGS LELVFQPVGE MNLSAAFSIP DALVTTEPQE  840
PFGGLLVEDA GSSKDLRNLC PAVADAIVDE RLPENSCANL PCAELSPKQH LATLSQTMPR  900
VYSRQEMKSV TIKATYREDI IRFRISLSCG ILELKEEVAK RLKLELGTFD IKYLDDDQEW  960
VLIACDADLQ ECLDISRSSG SNMIRLSIHD IMANLGSSCE STGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein