PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY39340.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 1029aa MW: 114009 Da PI: 5.2443

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY39340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	622	672	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ GAY39340.1 622 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 672 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence
PQPKPGIMPE PDEENQTRYM PPAPPRTKEV TFMASSIMDV DVVDLDLDNP WPSDQMGFVS 60 NPMSPFLISE QPCSPLWAFS DADNDDKLSG HVNYPLFLKC NPNSETENPK DNDENRRFPS 120 PLSALMPLEN PDGYCMIKER ITQALRYFKD STEQHVLAQV WVPVKVGGRY VLTTSGQPFV 180 LDPHSNGLHQ YRMVSLMYMF SVDGESDGEL GLPGRVFWQK LPEWTPNVQY YSSKEYSRLD 240 HALHHNVRGT MALPVFEPSG QSCVAVIELI MTSQKINYAP EVDKVCKALE AVNLKSSEIL 300 DYPSTQINLL FFFFCLCSHR CIYLAMLLNQ ICNEGRQNAL AEILEILSVV CETHKLPLAQ 360 TWVPCRHRSV LAYGGGLKKS CSSIDGSCMG QVCMSTTDVA FYVVDGHMWG FREACVEHHL 420 QKDQGVAGRA FFSLSSCFCK DITQFCKTEY PLVHYARMFG LTSCFAICLR STYTGDDDYI 480 LEFFLPPAIT DSYEQQTLLG SILATMKQHF QSLKVASGID LEDDEGTIEI IEGEATADKK 540 LNLRMESIRI PQSVRSPPQP HALPNGGELG QLDIPEQQLM ENFDYMNSRG NAVNVGGNDN 600 PVSLLENKNT RKLSERKRGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG 660 ISRWPSRKIN KVNRSLTKLK RVIESVQGTN GTFGLTSLTT SPLPVAVNSI SWPSGLNGSN 720 QQNSPNSKPE LLGEKILSPI YKTPGSDGHT ELEDRLSGGR MSTHEEHIHE QNALSPEIGK 780 GKNSPKTGSG SREESDGSPT SHGSCQGNPA NESAPAKDVL VSSIHEPRFK VGGSLELVFQ 840 PVGEMNLSAA FSIPDALVTT EPQEPFGGLL VEDAGSSKDL RNLCPAVADA IVDERLPENS 900 CANLPCAELS PKQHLATLSQ TMPRVYSRQE MKSVTIKATY REDIIRFRIS LSCGILELKE 960 EVAKRLKLEL GTFDIKYLDD DQEWVLIACD ADLQECLDIS RSSGSNMIRL SIHDIMANLG 1020 SSCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence

PQPKPGIMPE PDEENQTRYM PPAPPRTKEV TFMASSIMDV DVVDLDLDNP WPSDQMGFVS  60
NPMSPFLISE QPCSPLWAFS DADNDDKLSG HVNYPLFLKC NPNSETENPK DNDENRRFPS  120
PLSALMPLEN PDGYCMIKER ITQALRYFKD STEQHVLAQV WVPVKVGGRY VLTTSGQPFV  180
LDPHSNGLHQ YRMVSLMYMF SVDGESDGEL GLPGRVFWQK LPEWTPNVQY YSSKEYSRLD  240
HALHHNVRGT MALPVFEPSG QSCVAVIELI MTSQKINYAP EVDKVCKALE AVNLKSSEIL  300
DYPSTQINLL FFFFCLCSHR CIYLAMLLNQ ICNEGRQNAL AEILEILSVV CETHKLPLAQ  360
TWVPCRHRSV LAYGGGLKKS CSSIDGSCMG QVCMSTTDVA FYVVDGHMWG FREACVEHHL  420
QKDQGVAGRA FFSLSSCFCK DITQFCKTEY PLVHYARMFG LTSCFAICLR STYTGDDDYI  480
LEFFLPPAIT DSYEQQTLLG SILATMKQHF QSLKVASGID LEDDEGTIEI IEGEATADKK  540
LNLRMESIRI PQSVRSPPQP HALPNGGELG QLDIPEQQLM ENFDYMNSRG NAVNVGGNDN  600
PVSLLENKNT RKLSERKRGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG  660
ISRWPSRKIN KVNRSLTKLK RVIESVQGTN GTFGLTSLTT SPLPVAVNSI SWPSGLNGSN  720
QQNSPNSKPE LLGEKILSPI YKTPGSDGHT ELEDRLSGGR MSTHEEHIHE QNALSPEIGK  780
GKNSPKTGSG SREESDGSPT SHGSCQGNPA NESAPAKDVL VSSIHEPRFK VGGSLELVFQ  840
PVGEMNLSAA FSIPDALVTT EPQEPFGGLL VEDAGSSKDL RNLCPAVADA IVDERLPENS  900
CANLPCAELS PKQHLATLSQ TMPRVYSRQE MKSVTIKATY REDIIRFRIS LSCGILELKE  960
EVAKRLKLEL GTFDIKYLDD DQEWVLIACD ADLQECLDIS RSSGSNMIRL SIHDIMANLG  1020
SSCESTGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein