PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37497.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 24327.8 Da PI: 8.3186

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.7	4.8e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng++KKA EL +LCda+v+++i sst k +ey+s GAY37497.1 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59 79***********************************************86 PP
2	K-box	73	8.6e-25	71	166	1	96
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 yqk+ ++l+++++e++ ++l +++ ++ L++++R+++Ge+L++L+l+eL Leq++ ++lk i + K+++l +qi++ ++k + +q+enk+L+ GAY37497.1 71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQD 166 78888889*************************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGRGKMEMKR IENATNRQVT FSKRRNGLFK KARELTILCD AKVSILICSS TAKAHEYISP 60 STTTKQLLDL YQKTLRVDLW SSHYEKMLEN LGAVEQVNRI LKKQIRQRMG ESLNDLTLEE 120 LTGLEQDILD GLKIIHECKD QVLARQINTF KRKVRGVQKE NKSLQDGFII NAKEEDPHYE 180 YELVDNGEHC DSDFGFQNEG PGIFALRLQP N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-67	MIKC_MADS family protein