PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY33957.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93158.4 Da    PI: 6.4643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY33957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182078357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  GAY33957.1 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                6789*****************************************************97 PP
2START170.31.3e-531693762204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++   +e+l+d + W ++++  ++l vi +g  g+++l+++++
  GAY33957.1 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPT-KIAEILKDCPSWFRDCRCLDVLSVIPTGngGTIELIYMQT 266
                 6899******************************************************.8999999999****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf+ +Ry+ +l++g++v++++S++s +  p+    ss+vRae+l Sg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++
  GAY33957.1 267 YAPTTLAAaRDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTgppPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQ 365
                 ***********************************99999888899***************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k+++a++++ +
  GAY33957.1 366 KMTMAAMRHIR 376
                 ******99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MALTMHNKEF ANKQIMDSSK YVRYTPEQVE ALERVYSECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGYM  120
RQQLHSAPAT TTDNSCESVV MSGQHQQQQN PTPQHPQRDA SNPAGLLAVA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLDPTKIAE ILKDCPSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWL LRYSTSLEDG SLVVCERSLT  300
SSTGGPTGPP PSSFVRAEML ASGFLIRPCE GGGSIIHIVD HVDLDAWSVP EVLRPLYESS  360
KILAQKMTMA AMRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLSRGFND AINGFLDDGW  420
SLLSSDGGED VTIAINSSPN KFLGSQYNWS MLPAFGGVLC AKASMLLQNV PPALLVRFLR  480
EHRSEWADYG VDAYSAACLK ASPYAVPCAR PGGFPSSHVI LPLAHTVEHE EFLEVVRLEG  540
HAFSPEDVAL ARDMYLLQLC SGIDENTVGA CAQLVFAPID ESFADDAPLL ASGFRVIPLD  600
SKAAMQQDGP AASRTLDLAS ALEVGSGGAR PAGGTELSNY NSRSVLTIAF QFTFENHMRD  660
NVAAMARQYV RSVVGSVQRV AMAISPSRLG PHAGPKALPG SPEALTLARW ISRSYRVHTG  720
GELLRADSLT GDALLKQLWH HSDAIMCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM  780
LDKILDEAGR KILCSEFAKI MQQGFAYLPG GMCVSSMGRA VSYEQAVAWK VLDDDDSNHC  840
LAFMFMNWSF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein