PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc045249.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 730aa MW: 84401.8 Da PI: 6.9179

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc045249.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.7	9.2e-08	561	603	2	44
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +k++s e+++k++ ++ k+AAk+Lgv+l++LKr+ ++G++ W Cse_sc045249.1_g010.1 561 QKKLSRENIEKHYGKTEKQAAKDLGVSLSTLKRKRNKLGMSGW 603 799*******************************999998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MADSRDEEKK YLSGFLESFP TYRLHSEPQS GFDGLWVFSN KDEGYESNSH QIHNDLQHPV 60 NLFPSYVLIA QFWAPVTIGG KHLLSTSGQP FAVNNLGSNY FKKYRRRCVE YPYDIDVNSK 120 FRSTPASAFL NRFPEIASMY TSVHHEMDPL LRYAFHECGL RDSFMMPIYC PSQTSSSCDC 180 IGVIECSSWF TNCTGLFIEI NMKIKVGSRF GCVQSQRSYT IQGKYALINE LKSSSFLTSL 240 SYCEILHLFK YFTLVEQTIN GLKLVRDQIQ EALKIVCQSH HITLAQVWIA SLDENYMHFS 300 SSWEEAQTRQ LLGLKLTGYE NIDEDNEERC WLFQNYYDAC DLIPLQPGEE FILKTLQDYE 360 PRFCKNISKL GFYKLMGWEW NWYAATDRSM GLTICMRSIH TGDFNYVFEF IWKHNLFNPS 420 LLEEILLEIK RCLPSFKFAS GTEIGDKLHV IEVNSSTDKE IKMFDIFQLK RLAPIPGALK 480 EGKKQVAVDY IAPLDTNCKT TPVLVPQQVI EQQFGTSTTE DFLDRMADRD DERLSESMNK 540 GKKAMVVNYN AHPKEKRDTS QKKLSRENIE KHYGKTEKQA AKDLGVSLST LKRKRNKLGM 600 SGWQGPDLSH RNAYSSNKNQ SKESHTHEKD NGVIQDPSPV KRNENTVIKA EYADDIIRLH 660 LPISEATFVT VENEIGKEFK LKHGTFKIKY RDEDEEWILM KTDQDLNDCI QSSRNVDRSV 720 VRLRVRLHNQ

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MADSRDEEKK YLSGFLESFP TYRLHSEPQS GFDGLWVFSN KDEGYESNSH QIHNDLQHPV  60
NLFPSYVLIA QFWAPVTIGG KHLLSTSGQP FAVNNLGSNY FKKYRRRCVE YPYDIDVNSK  120
FRSTPASAFL NRFPEIASMY TSVHHEMDPL LRYAFHECGL RDSFMMPIYC PSQTSSSCDC  180
IGVIECSSWF TNCTGLFIEI NMKIKVGSRF GCVQSQRSYT IQGKYALINE LKSSSFLTSL  240
SYCEILHLFK YFTLVEQTIN GLKLVRDQIQ EALKIVCQSH HITLAQVWIA SLDENYMHFS  300
SSWEEAQTRQ LLGLKLTGYE NIDEDNEERC WLFQNYYDAC DLIPLQPGEE FILKTLQDYE  360
PRFCKNISKL GFYKLMGWEW NWYAATDRSM GLTICMRSIH TGDFNYVFEF IWKHNLFNPS  420
LLEEILLEIK RCLPSFKFAS GTEIGDKLHV IEVNSSTDKE IKMFDIFQLK RLAPIPGALK  480
EGKKQVAVDY IAPLDTNCKT TPVLVPQQVI EQQFGTSTTE DFLDRMADRD DERLSESMNK  540
GKKAMVVNYN AHPKEKRDTS QKKLSRENIE KHYGKTEKQA AKDLGVSLST LKRKRNKLGM  600
SGWQGPDLSH RNAYSSNKNQ SKESHTHEKD NGVIQDPSPV KRNENTVIKA EYADDIIRLH  660
LPISEATFVT VENEIGKEFK LKHGTFKIKY RDEDEEWILM KTDQDLNDCI QSSRNVDRSV  720
VRLRVRLHNQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	591	598	LKRKRNKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-23	Nin-like family protein