PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc043304.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 339aa MW: 37005 Da PI: 7.5892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc043304.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cse_sc043304.1_g020.1 143 YECKTCSRTFPSFQALGGHRASH 165 99**********99999998887 PP
2	zf-C2H2	14.8	8.3e-05	226	248	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F++ L H+r+H Cse_sc043304.1_g020.1 226 HECSICGTEFNSGQALGGHMRRH 248 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MEAAIEQTTT TIPTPIDTAA TPSTMASAAS GGVDHDNDNG PMVMDIINVA KGKRTKRQRP 60 QSPIQFTFSS TNNNNDLTYS PVSSSNFPAG STTTEDEDTA ESLILLSKGP SLDFLTSKKT 120 KADDYDGMYK FNSKKYIAGM FVYECKTCSR TFPSFQALGG HRASHKKPKY NQDVWKPPPY 180 FDNNEVPQPQ QAFPSRNNNY SSFSYLSLQL NNRVSSTTKF SSSKLHECSI CGTEFNSGQA 240 LGGHMRRHRV AGGNKGGHNS NANTNNINTN ATALAMVPYN PVTTMEVYNP KEKNDELSLS 300 LGLDLNLPAP RETTAVTGDE KKEPGVHLST SSTLVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	9e-37	C2H2 family protein