PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc010251.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 376aa MW: 40370.3 Da PI: 8.1147

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc010251.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.2	5e-12	47	73	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG++C+++H+p Cse_sc010251.1_g010.1 47 PGMPDCAYYMRTGTCGYGSKCRYNHPP 73 5789*********************97 PP
2	zf-CCCH	42.3	1.2e-13	242	268	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++CkF+H+p Cse_sc010251.1_g010.1 242 PGQPECQYYMKTGDCKFGASCKFHHPP 268 5789*********************97 PP
3	zf-CCCH	36.2	1e-11	288	313	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ e+C+f++++G+Ck+G +CkF H+ Cse_sc010251.1_g010.1 288 PGVEPCNFYMQNGHCKFGRTCKFDHP 313 578**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MEMYGRDHNQ QSEWIQPTGA ETGIEESMRR LGLLGGRGGG EFYPERPGMP DCAYYMRTGT 60 CGYGSKCRYN HPPDRTTSAG GAARTPGGGG YPERPGEPPC QCKFGITCKF HHPPPTGESV 120 PASARPFYST VQSPSAPSPE QYAGPSTGYR VARPPLVPGS YAPGAYGPIL LSPGMVPMPN 180 WSPYSGRVSP VLSPGPQPSM AAASAYGVNT SAPAFATQYR PLTPSPGHMG TSQTERVFPE 240 RPGQPECQYY MKTGDCKFGA SCKFHHPPDW VVQQDNCMLS PMGLPLRPGV EPCNFYMQNG 300 HCKFGRTCKF DHPVQGAVNY GPSSDIPIAP YMTMAPSVSF SERSKMDPHS SSSVGMMFSQ 360 AHSGSSGESQ SSPQTR

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MEMYGRDHNQ QSEWIQPTGA ETGIEESMRR LGLLGGRGGG EFYPERPGMP DCAYYMRTGT  60
CGYGSKCRYN HPPDRTTSAG GAARTPGGGG YPERPGEPPC QCKFGITCKF HHPPPTGESV  120
PASARPFYST VQSPSAPSPE QYAGPSTGYR VARPPLVPGS YAPGAYGPIL LSPGMVPMPN  180
WSPYSGRVSP VLSPGPQPSM AAASAYGVNT SAPAFATQYR PLTPSPGHMG TSQTERVFPE  240
RPGQPECQYY MKTGDCKFGA SCKFHHPPDW VVQQDNCMLS PMGLPLRPGV EPCNFYMQNG  300
HCKFGRTCKF DHPVQGAVNY GPSSDIPIAP YMTMAPSVSF SERSKMDPHS SSSVGMMFSQ  360
AHSGSSGESQ SSPQTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-102	C3H family protein