PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007076.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 390aa MW: 44258.7 Da PI: 5.1333

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007076.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	59	115	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ +++++ Aa+ ++ a++k++g Cse_sc007076.1_g020.1 59 SIYRGVTRHRWTGRFEAHLWDkGTWNSiQNKKGKQRAYDSEDAAARTYDLAALKYWG 115 57*****************888899977554559999************98 PP
2	AP2	51.3	3e-16	158	210	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa+a++ a+ +++g+ Cse_sc007076.1_g020.1 158 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAAAYDLAAIEYRGA 210 89**99******988422...5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MKRRRLSPTC SSSCSSSSSC INELQLPKAK KPKRPNNKNK ANNKILGSNQ NAETARRSSI 60 YRGVTRHRWT GRFEAHLWDK GTWNSIQNKK GKQRAYDSED AAARTYDLAA LKYWGPDTTL 120 NFEIDTYKKD IEEMEKLSKD EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVL 180 GNKYLYLGTY STQEEAAAAY DLAAIEYRGA KAVTNFDISI YADRLKNVVP EVQSTPESTE 240 IVASPKNEQV EDVHQDINCQ AQQEQQLEQE QQLAQEQQQE QQQEATLEEI EDSLAEIHNL 300 DFTPSAEDEN PWSLCLDSNY NLLPVPHMPF DKSGELLDLF DDTGFEDNID NIFDGAFSYE 360 NELEKVDAFI TSPSSSSSTT TSLSCPISHC

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MKRRRLSPTC SSSCSSSSSC INELQLPKAK KPKRPNNKNK ANNKILGSNQ NAETARRSSI  60
YRGVTRHRWT GRFEAHLWDK GTWNSIQNKK GKQRAYDSED AAARTYDLAA LKYWGPDTTL  120
NFEIDTYKKD IEEMEKLSKD EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVL  180
GNKYLYLGTY STQEEAAAAY DLAAIEYRGA KAVTNFDISI YADRLKNVVP EVQSTPESTE  240
IVASPKNEQV EDVHQDINCQ AQQEQQLEQE QQLAQEQQQE QQQEATLEEI EDSLAEIHNL  300
DFTPSAEDEN PWSLCLDSNY NLLPVPHMPF DKSGELLDLF DDTGFEDNID NIFDGAFSYE  360
NELEKVDAFI TSPSSSSSTT TSLSCPISHC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	6	KRRRL
2	2	33	KRRRLSPTCSSSCSSSSSCINELQLPKAKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-85	AP2 family protein