PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005560.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 561aa MW: 63656 Da PI: 9.1411

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005560.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	42.1	1.7e-13	312	357	3	49
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 ++isle+++k+ +pi+ AA +L+v+ ++L r CR++GI RWP Rk Cse_sc005560.1_g070.1 312 SSISLEEIEKHIGKPIRVAAASLNVSRSALRRCCRNLGI-RWPNRKY 357 689**********************************.9**96 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MRGNSVGGGS RSMVLGALKS RYSYLSEPLP PATAGGLDND RRQLHPLLVF GSRKVHPHSL 60 PAASPFKPML DLNITIDPQM IKDKIRAVLS GLYFREPHVL VQFWSPVTVQ KRCSLMTLDQ 120 PFGLGAVDEG LYMYRLESEQ RMFAIEEEHK EELGPPGRVY CQKLPEWSFG IHTLQVRQYV 180 QDLAACYNIH GYIILPVFGP GSGCCLGVLE LITSSNCIDN AFEVREVLRA LKEENLRSSN 240 IFQDHSFYVS CVHTHVRDER RQHEQDEIQI KPSIFDAAEG TGQSAVPCLD VEIEDFDINP 300 GTTQRNRKKS VSSISLEEIE KHIGKPIRVA AASLNVSRSA LRRCCRNLGI RWPNRKYNDK 360 SSKTIRKRKR TESSVGLKKI NKKHYGRKTT KELLDILVVV VSRLVKLSRK RRGILRRPYR 420 NGPDKKIHTS EEASNSVFGE RLCTKNPLYP KTQEQTEQYN ENTAATNTVK ILTIEATYRE 480 STAKFDFRIS DGLVKLEELV ATMFQLDFGS FKLKYVDPDG DLILIACDID LTQSVVDFRQ 540 TDHHTDIKLL VLPVVHQSHN V

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MRGNSVGGGS RSMVLGALKS RYSYLSEPLP PATAGGLDND RRQLHPLLVF GSRKVHPHSL  60
PAASPFKPML DLNITIDPQM IKDKIRAVLS GLYFREPHVL VQFWSPVTVQ KRCSLMTLDQ  120
PFGLGAVDEG LYMYRLESEQ RMFAIEEEHK EELGPPGRVY CQKLPEWSFG IHTLQVRQYV  180
QDLAACYNIH GYIILPVFGP GSGCCLGVLE LITSSNCIDN AFEVREVLRA LKEENLRSSN  240
IFQDHSFYVS CVHTHVRDER RQHEQDEIQI KPSIFDAAEG TGQSAVPCLD VEIEDFDINP  300
GTTQRNRKKS VSSISLEEIE KHIGKPIRVA AASLNVSRSA LRRCCRNLGI RWPNRKYNDK  360
SSKTIRKRKR TESSVGLKKI NKKHYGRKTT KELLDILVVV VSRLVKLSRK RRGILRRPYR  420
NGPDKKIHTS EEASNSVFGE RLCTKNPLYP KTQEQTEQYN ENTAATNTVK ILTIEATYRE  480
STAKFDFRIS DGLVKLEELV ATMFQLDFGS FKLKYVDPDG DLILIACDID LTQSVVDFRQ  540
TDHHTDIKLL VLPVVHQSHN V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	391	KRKRTESSVGLKKINKKHYGRKTTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-31	Nin-like family protein