PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003924.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 503aa    MW: 56627.3 Da    PI: 4.975
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003924.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.13.2e-861425022374
                   GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            ++ L++ A+++++++++laq +L+rl+++ ++p+g+p+qR+++yf+eA+++ l++s+  l    ++++    + ++ ++a+k+fs+vs
  Cse_sc003924.1_g030.1 142 RDELTRLADCFETQSFQLAQVILTRLNNRlRTPNGKPLQRAVFYFKEAIQTLLTGSTRCLT---SCTSL---EIVQLIKAYKIFSNVS 223
                            6789***********************998*************************333222...34444...499************* PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            Pi+ fs +taNqaIl+ +eg+  vH+iDfdi+ G++W+++++a a+++     ++p +RiT+v+++e     e + ++e+L +f+ el
  Cse_sc003924.1_g030.1 224 PIPLFSSFTANQAILDVIEGSMNVHVIDFDIGLGGHWASFFKAVAEKAesrkVNSPAVRITAVVPEE--YVLESKLIKENLCSFCGEL 309
                            *********************************************8875444679**********66..999999************* PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfle 259
                            +++f+++++  + +e +++++ ++ +gE++aV l+  ++r              +++ ++++sP+vvv v+ e++  +++ F + +++
  Cse_sc003924.1_g030.1 310 NIQFDIEFVSIRVFEFVSFKSVKFVNGEKTAVVLSPTIFRRI---------GGGFVNDLRRVSPDVVVYVDGELNGyGNALFRQTVID 388
                            ********9999************************999998.........358*******************9988*********** PP

                   GRAS 260 aleyysalfdsleak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                             +e ++++++slea        +  se+++++E ++l ++i  +v  +g++          Wre +++aG++pv +s++a+ qa++ll
  Cse_sc003924.1_g030.1 389 GVELFTTVMESLEAAnggvggGGGGSEWMRSIEMFVLLPKIIAMVEDSGRR-------GTAWREVFGRAGMRPVVMSQFAEFQAECLL 469
                            ************77757766556678**********************998.......789*************************** PP

                   GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            r+v+++g++v ++++++vl+W+drpLv++S+W+
  Cse_sc003924.1_g030.1 470 RRVQVRGFHVAKRHAEMVLCWHDRPLVATSVWT 502
                            ********************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MKLPFVNSSS IDHTLTNTRY EPKSVLDIRQ SPPSPVTCNS SSLDNYNNNI SSFLPIENFE  60
NGMINNHFEA EWDSDSIMKE LGLYDDSNKS VTYPLSDLPD LPPYYHSEFD NINQNTVNPF  120
DLMNQLDEGV NENYDHHEYD FRDELTRLAD CFETQSFQLA QVILTRLNNR LRTPNGKPLQ  180
RAVFYFKEAI QTLLTGSTRC LTSCTSLEIV QLIKAYKIFS NVSPIPLFSS FTANQAILDV  240
IEGSMNVHVI DFDIGLGGHW ASFFKAVAEK AESRKVNSPA VRITAVVPEE YVLESKLIKE  300
NLCSFCGELN IQFDIEFVSI RVFEFVSFKS VKFVNGEKTA VVLSPTIFRR IGGGFVNDLR  360
RVSPDVVVYV DGELNGYGNA LFRQTVIDGV ELFTTVMESL EAANGGVGGG GGGSEWMRSI  420
EMFVLLPKII AMVEDSGRRG TAWREVFGRA GMRPVVMSQF AEFQAECLLR RVQVRGFHVA  480
KRHAEMVLCW HDRPLVATSV WTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-119GRAS family protein