PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002579.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 328aa MW: 35873.6 Da PI: 7.5832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002579.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cse_sc002579.1_g020.1 126 YECKTCSRTFPSFQALGGHRASH 148 99**********99999998887 PP
2	zf-C2H2	13	0.00031	213	235	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Cse_sc002579.1_g020.1 213 HECSICGSEFNSGQALGGHMRRH 235 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
METLLPQQTT IKANTISVGS SGEDRGPKDQ TTIIKRKRTK RPRPAIVTHS STSYNAINSS 60 PSSSSNFLAT STTTEDEDTA NCLILLSRGH DIVSSTKNSN EVLLDPKFNS KKYIQTSTDD 120 PGSYVYECKT CSRTFPSFQA LGGHRASHNK PRNNELETKK PRYNPSSDED EPQPPQQLPS 180 RKNNSSSSSS ISIQLNYPNP LSKSTNKSFS KVHECSICGS EFNSGQALGG HMRRHRATLT 240 TSTTPDVTVV TDTNTTLSLV PYNAVTTMVV DDQDNIKSRN DGLFFDLDLN LPAPPETVVA 300 VSDHDQLRGS LQPVAHLSAT PTLVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	44	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-33	C2H2 family protein