PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc001298.1_g060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 26530.5 Da PI: 9.429 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.1 | 8.6e-22 | 20 | 63 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k qvtfskRr g++KKA+EL++LC++e+a+++fs+ gk++ + Cse_sc001298.1_g060.1 20 KNHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPAGKVFSF 63 56679************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MAKKPSLGRQ KIKIAKIQIK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPAGKV 60 FSFGHPKVES VVDRFLLARN SNLINSTSLH LVDSHRIASI PELNMQLTHM LNELEVEKKI 120 TNALDEMRKT SRSQFWWEAP IEDLSLHELE QLKDSMEELK KIDSMEELKK IVAIQANQLF 180 TENSNSLSIF GTNNNSIRGG VDHYEMKPTP IIPSSSGASH VQNYGYGHGL FGSFVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-53 | M-type_MADS family protein |