PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000866.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 356aa MW: 40400.8 Da PI: 6.7281

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000866.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	188	207	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cse_sc000866.1_g070.1 188 FSCPLCFKTFNRYNNMQMHM 207 89*****************9 PP
2	zf-C2H2	14.4	0.00011	272	294	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Cse_sc000866.1_g070.1 272 FMCRKCGKAFAVRGDWRTHEKNC 294 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MSSNHPYFNG SWFNLNSNPN PNYHYFSSPL SYSYSTFAHI YQPPPQPLAP SSPPLREALP 60 LLSQSPTRTP INLNQEYDSS TIIDASSTTT MEVTHDHHDH DDEHETVTVA LHLGLPSPAF 120 SEADLTPKLS TNSNNIFVTE NDDDHHHTSK QVEEEEGTNS NAYLSSALNK GQYWIPTPAQ 180 ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRRGPES LRGTQPTAML RLPCYCCAPG 240 CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC 300 SCGSDFKHKR SLKDHIKAFG NGHSAYGIDD CCFELEEEEA ASEIEQDNES SHNCDN

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MSSNHPYFNG SWFNLNSNPN PNYHYFSSPL SYSYSTFAHI YQPPPQPLAP SSPPLREALP  60
LLSQSPTRTP INLNQEYDSS TIIDASSTTT MEVTHDHHDH DDEHETVTVA LHLGLPSPAF  120
SEADLTPKLS TNSNNIFVTE NDDDHHHTSK QVEEEEGTNS NAYLSSALNK GQYWIPTPAQ  180
ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRRGPES LRGTQPTAML RLPCYCCAPG  240
CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC  300
SCGSDFKHKR SLKDHIKAFG NGHSAYGIDD CCFELEEEEA ASEIEQDNES SHNCDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein