PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000567.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 830aa MW: 93802.6 Da PI: 7.962

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000567.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37	6.6e-12	550	593	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +++s++ ++++ +pi ++A + gv+ ++LK CR++GI+ WP Cse_sc000567.1_g010.1 550 DSLSMKAIEQHVGKPISQVAESFGVSKSTLKSFCRENGISSWPK 593 6899***************************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MDLFGRSQSV SSEYKEKSSY SGSHSVFSTD QKTDLLWSKV SLERPTDSFF GESRYLTRLW 60 VSRNEEPLDK LYRAEIVQRI RAVLKLLAFR EQHVLVQFWS PRVTGRHQLL TTLDQPFGLG 120 VANEELCFYR RDSERNTFLV DKDDEKDVSP PARVFRQGLP EWTSDITNYL PKHFPQYDSA 180 IRCNLHGYLA LPVFDSTTRL RAGVLELLMS SKNSSYAFEV QQVHKALKTQ NLTISQVSDS 240 ATPKVPTECR QDELVKIFGI LKSVCDTHNL PFAQTWVVSP STSFVSHDKI IDKSCGSFET 300 KCIGKICMHT TDLPFHVRDL GTWPFREACI EQHLDKSCSF VGRALLARGS SYCQDVTELT 360 EKEYPLVHNA HMSKITSCFA IFLHSLEGNG EYVLEFFLPL YMKDSSYVPY LVQTLKQKVE 420 DASGFKLGDI SSPTGPPRDA GYLSLNMKPQ SIQISTATTA NTLVFGMESS DSGSFLANVV 480 ETDSTNVQSQ CSSKEHGPND MSDNVNMVGS REDGNANFYS IVINQTTSDT ITDARENSRP 540 LKRGRKRKID SLSMKAIEQH VGKPISQVAE SFGVSKSTLK SFCRENGISS WPKPIQSKKT 600 CHATDPKMSE VVSQQSSQRL SSSGMHSCLT SKSDSIYQAA YLMVKAIFKD DMIKFRFPIT 660 SGLLELENEV AQRLDLKGKG LSIKYKDEEN DLLLITCDDD LHSFRNFLAR NTTAKLLVEA 720 RVIASALLPP TQLSTYVCVC LVTLCYDLES YRVFLIKMPS KTRSSTSTEE DWLRETIARL 780 MREQMKKMRL EMRNVADTGK DGVLARNQGE IQRHDMQYNK RHAIQKGNKD

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MDLFGRSQSV SSEYKEKSSY SGSHSVFSTD QKTDLLWSKV SLERPTDSFF GESRYLTRLW  60
VSRNEEPLDK LYRAEIVQRI RAVLKLLAFR EQHVLVQFWS PRVTGRHQLL TTLDQPFGLG  120
VANEELCFYR RDSERNTFLV DKDDEKDVSP PARVFRQGLP EWTSDITNYL PKHFPQYDSA  180
IRCNLHGYLA LPVFDSTTRL RAGVLELLMS SKNSSYAFEV QQVHKALKTQ NLTISQVSDS  240
ATPKVPTECR QDELVKIFGI LKSVCDTHNL PFAQTWVVSP STSFVSHDKI IDKSCGSFET  300
KCIGKICMHT TDLPFHVRDL GTWPFREACI EQHLDKSCSF VGRALLARGS SYCQDVTELT  360
EKEYPLVHNA HMSKITSCFA IFLHSLEGNG EYVLEFFLPL YMKDSSYVPY LVQTLKQKVE  420
DASGFKLGDI SSPTGPPRDA GYLSLNMKPQ SIQISTATTA NTLVFGMESS DSGSFLANVV  480
ETDSTNVQSQ CSSKEHGPND MSDNVNMVGS REDGNANFYS IVINQTTSDT ITDARENSRP  540
LKRGRKRKID SLSMKAIEQH VGKPISQVAE SFGVSKSTLK SFCRENGISS WPKPIQSKKT  600
CHATDPKMSE VVSQQSSQRL SSSGMHSCLT SKSDSIYQAA YLMVKAIFKD DMIKFRFPIT  660
SGLLELENEV AQRLDLKGKG LSIKYKDEEN DLLLITCDDD LHSFRNFLAR NTTAKLLVEA  720
RVIASALLPP TQLSTYVCVC LVTLCYDLES YRVFLIKMPS KTRSSTSTEE DWLRETIARL  780
MREQMKKMRL EMRNVADTGK DGVLARNQGE IQRHDMQYNK RHAIQKGNKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-85	Nin-like family protein