PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000027.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 344aa MW: 39336.7 Da PI: 7.0279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000027.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	178	197	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Cse_sc000027.1_g070.1 178 FSCPLCFKTFNRYNNMQMHM 197 89*****************9 PP
2	zf-C2H2	14.4	0.00011	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Cse_sc000027.1_g070.1 262 FMCRKCGKAFAVRGDWRTHEKNC 284 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MTSDHPYSTY YHGSWFNLNN PHLSSSSLTS VSSSSHTSLS HYYEPSPPSP PLKEALPLLS 60 LSPTRRLNHD HEQNPRSDSC AHFMEIDHNR KTCDDEHETV TVALHLGLPS YNLCETDLLS 120 RLSSNTHENN NIEIDHKQVV EEEVEEGNDS NGFLTSTLNK GQYWIPTPSQ ILIGPTQFSC 180 PLCFKTFNRY NNMQMHMWGH GSQYRRGPES LRGIQPTAML RLPCYCCAPR CHNNIDHPRA 240 KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC SCGSDFKHKR 300 SLKDHIKAFG NGHAAYGIDD ELEEEEAANS EIDHQENESS CGYN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MTSDHPYSTY YHGSWFNLNN PHLSSSSLTS VSSSSHTSLS HYYEPSPPSP PLKEALPLLS  60
LSPTRRLNHD HEQNPRSDSC AHFMEIDHNR KTCDDEHETV TVALHLGLPS YNLCETDLLS  120
RLSSNTHENN NIEIDHKQVV EEEVEEGNDS NGFLTSTLNK GQYWIPTPSQ ILIGPTQFSC  180
PLCFKTFNRY NNMQMHMWGH GSQYRRGPES LRGIQPTAML RLPCYCCAPR CHNNIDHPRA  240
KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC SCGSDFKHKR  300
SLKDHIKAFG NGHAAYGIDD ELEEEEAANS EIDHQENESS CGYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-123	C2H2 family protein