PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000027.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 584aa MW: 65020.5 Da PI: 6.4708

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000027.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.9	2.1e-07	173	213	1	36
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkf 36 s y+GV++++++gr++A+++d + g ++ ++++lg f Cse_sc000027.1_g030.1 173 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGEF 213 57*****************665564477446****98 PP
2	AP2	47	6.5e-15	307	356	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Cse_sc000027.1_g030.1 307 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 356 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MNSNNWLSFP LSPTHSSLPP HLHTAQSHNF NLGVVHDNMD TPFPNQEWNM IGSQSSNDQV 60 PKVADFLGVS KSENSSDLVA YNDIQGNDTD YLFTNNNLLP QVQNTLSATP TSYELPENAS 120 TLQSLTLSMG SGKRSTCETS TPENSSTDNT NSTTSIVEAN PRRTLDTFGQ RTSIYRGVTR 180 HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GEFFYIYCSV LISFHQSFDY VVKAWFICGL 240 GGYDKEEKAA RAYDMAALKY WGTSTTTNFP ITNYEKELED MKNMTRQEFV ASIRRKSSGF 300 SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLSAV 360 TNFDMNRYDV KSILESNTLP IGGGAAKRLK EAQAIESSRK REEMLALGSG FPFGNTATAG 420 SVLQAYPLLQ QSFETQSAQP LLTLQNPEIS HYSTQDPHFH QNYLQAHHHH PYNMHSSQHS 480 STQTPQFYNS YLQNNPVLLH GLMNMGGSSS SVMDGTNNNG GTSSGSYSGG GYMGNFLGQS 540 GSTPEELSMV KVDYDNLPTE NYAGWSGDSS VQESSPSVFT MWND

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MNSNNWLSFP LSPTHSSLPP HLHTAQSHNF NLGVVHDNMD TPFPNQEWNM IGSQSSNDQV  60
PKVADFLGVS KSENSSDLVA YNDIQGNDTD YLFTNNNLLP QVQNTLSATP TSYELPENAS  120
TLQSLTLSMG SGKRSTCETS TPENSSTDNT NSTTSIVEAN PRRTLDTFGQ RTSIYRGVTR  180
HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GEFFYIYCSV LISFHQSFDY VVKAWFICGL  240
GGYDKEEKAA RAYDMAALKY WGTSTTTNFP ITNYEKELED MKNMTRQEFV ASIRRKSSGF  300
SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLSAV  360
TNFDMNRYDV KSILESNTLP IGGGAAKRLK EAQAIESSRK REEMLALGSG FPFGNTATAG  420
SVLQAYPLLQ QSFETQSAQP LLTLQNPEIS HYSTQDPHFH QNYLQAHHHH PYNMHSSQHS  480
STQTPQFYNS YLQNNPVLLH GLMNMGGSSS SVMDGTNNNG GTSSGSYSGG GYMGNFLGQS  540
GSTPEELSMV KVDYDNLPTE NYAGWSGDSS VQESSPSVFT MWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein