PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.101_2s0115.3.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

Nin-like

Protein Properties

Length: 613aa MW: 64560.3 Da PI: 9.1149

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.101_2s0115.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.2	1.4e-17	48	89	10	51
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 l+ +F +++k+AA L vc+T+LKr CR++GI+ WP+R +++ Bobra.101_2s0115.3.p 48 LQPHFPKKLKEAAAALSVCPTTLKRNCRRLGINKWPQRAVTK 89 899***********************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MSDLCQKTAS HMPLSPGTPG FGLFHLLVSQ SLGVLTMRQS NANFCAFLQP HFPKKLKEAA 60 AALSVCPTTL KRNCRRLGIN KWPQRAVTKA IDRAILQRQL SGSSRRSSPT VHGGPGGSSG 120 KGGGLERAGS QTTATLSVND PRAGNLPQFN AQPLDLDLVQ ERMSAVGAGP PAVGEGVGEA 180 RLSSPIRQQH GTSSQFPDLR NALLMQGPSN PQFQNMPWKL STPQQHAVGP ASGPQSREVP 240 GEGGHEVVPF MVGMNGAMPV LLHIPSGAQQ SLHSSEGMQH MPVIFLQPPP IIVQSAPHVH 300 HEHMGPPPVQ PKPQQHAQGR SSVSPVNPPP TSYPGGALEI PQVLPKQGMS GPDAVALLPQ 360 PFNPLQVPQA HRPAQQSPQQ MDKSPLKPSR AQGAVSYPEG SPQSLALGSM SPQMGSWGQP 420 AQEMPSPQDA PKPQRQYSWI CKCEYPDPLI GLQIPREPPL AEGLRQFLQR DSLQRSRSNP 480 VAFLRSLDGG PQCLSPRPVP QEASTGPSLE GWGLLDSISG ILKGSDVGGP HPALPQFPGQ 540 PSGHSSFGIV AQGGGSSEMA YPGMLCRSPS ATHHDKSAAA PVDARGLGAL PKSASADFLD 600 AMLQDQGLLD LA*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MSDLCQKTAS HMPLSPGTPG FGLFHLLVSQ SLGVLTMRQS NANFCAFLQP HFPKKLKEAA  60
AALSVCPTTL KRNCRRLGIN KWPQRAVTKA IDRAILQRQL SGSSRRSSPT VHGGPGGSSG  120
KGGGLERAGS QTTATLSVND PRAGNLPQFN AQPLDLDLVQ ERMSAVGAGP PAVGEGVGEA  180
RLSSPIRQQH GTSSQFPDLR NALLMQGPSN PQFQNMPWKL STPQQHAVGP ASGPQSREVP  240
GEGGHEVVPF MVGMNGAMPV LLHIPSGAQQ SLHSSEGMQH MPVIFLQPPP IIVQSAPHVH  300
HEHMGPPPVQ PKPQQHAQGR SSVSPVNPPP TSYPGGALEI PQVLPKQGMS GPDAVALLPQ  360
PFNPLQVPQA HRPAQQSPQQ MDKSPLKPSR AQGAVSYPEG SPQSLALGSM SPQMGSWGQP  420
AQEMPSPQDA PKPQRQYSWI CKCEYPDPLI GLQIPREPPL AEGLRQFLQR DSLQRSRSNP  480
VAFLRSLDGG PQCLSPRPVP QEASTGPSLE GWGLLDSISG ILKGSDVGGP HPALPQFPGQ  540
PSGHSSFGIV AQGGGSSEMA YPGMLCRSPS ATHHDKSAAA PVDARGLGAL PKSASADFLD  600
AMLQDQGLLD LA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-10	Nin-like family protein