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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G122537_P02 | ||||||||
Common Name | HB82, wox3A, Zm.19184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 27466 Da PI: 7.5806 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.7e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Le++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ GRMZM2G122537_P02 18 TRWCPTPEQLMILEDMYRGgLRTPNASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 77 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.7 | 5.3e-38 | 17 | 78 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iLe++y+ GlrtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk GRMZM2G122537_P02 17 STRWCPTPEQLMILEDMYRGGLRTPNASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 78 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-4 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-10 | 17 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-17 | 18 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.59E-5 | 18 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-7 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.669 | 23 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MPSQQQQQQG QQVAAGSTRW CPTPEQLMIL EDMYRGGLRT PNASQIQQIT AHLACYGRIE 60 GKNVFYWFQN HKARDRQKMR RRLCMSHHLL SCAQYYAAAA HHGHAAFLAA PPPYGHQLLS 120 PSTTSPTPAA AAAAAAAAYG YYYPATAAFA APASRCAGNA TPPSPTTQLF HYQGGGGLVP 180 TEALGRPEYS LGKLDNFGVA LDDVVVSSTS GAVVDTMGAP PVAGFEVAPP LPAAFSCRPL 240 KTLDLFPGGL EEEQHDVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19184 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G122537 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G122537_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 0.0 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106239.1 | 0.0 | uncharacterized protein LOC100127511 | ||||
TrEMBL | A8Y7V7 | 0.0 | A8Y7V7_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G122537_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 | Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-40 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G122537_P02 |
Entrez Gene | 100127511 |
Publications ? help Back to Top | |||
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