PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678452358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23488.4 Da PI: 4.8782 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.8 | 4.1e-21 | 56 | 107 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+G+r+++ +g+W+AeIrdp gk r++lg+++taeeAa+a+++a+++++ge 678452358 56 SIYRGIRRRP-WGKWAAEIRDP---GKGIRVWLGTYDTAEEAARAYDRAARRIRGE 107 57********.**********8...545**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-14 | 56 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.76E-22 | 56 | 115 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-24 | 56 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-33 | 57 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-39 | 57 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.658 | 57 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-12 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-12 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MCGGAILAGL VPGLRGSRLE LTSADFWPDV ANPPKRPAPS SAGDELQTPV KKQRKSIYRG 60 IRRRPWGKWA AEIRDPGKGI RVWLGTYDTA EEAARAYDRA ARRIRGEKAK LNFPNEDDAA 120 PISGKVEVKS EEIDLATEGT VTGGGDGGAE KEPVIPFEKQ PTMAVEDEVQ KLSNELMAYE 180 SYMSFYQIPY LDGASGAAPS SQPQATMQLW SFDEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 58 | 116 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 64 | KKQRKSIYRGIRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678452358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079624.1 | 3e-75 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | S8E486 | 4e-69 | S8E486_9LAMI; Ethylene response factor 2 (Fragment) | ||||
STRING | XP_008454315.1 | 6e-65 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 7e-32 | ERF family protein |