PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678403179 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24050 Da PI: 5.907 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 9.6e-21 | 56 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+G+r+++ +g+W+AeIrdp gk r++lg+++taeeAa+a+++a++k++g 678403179 56 SIYRGIRRRP-WGKWAAEIRDP---GKGIRVWLGTYDTAEEAARAYDRAARKIRG 106 57********.**********8...545*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-24 | 56 | 116 | No hit | No description |
Pfam | PF00847 | 3.8E-14 | 56 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-24 | 56 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-40 | 57 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.79 | 57 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 57 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-12 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-12 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MCGGAILAGL IPGRRVSPSD LTASDFWPEV SNPPKRASPS STGDEFHAPL KKPRKSIYRG 60 IRRRPWGKWA AEIRDPGKGI RVWLGTYDTA EEAARAYDRA ARKIRGKKAK LNFPNDNDDV 120 LIAEKPIRSA VKDMKSEQID FAAEGIAVGG SGGYAEKPLI EFENESTAVE DEVQKLSNEL 180 MAYENYMSFY HIPYDGVSGV APSSQPPATT ELWTFDDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-22 | 58 | 116 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 64 | KKPRKSIYRGIRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678403179 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079624.1 | 7e-74 | ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | S8E486 | 1e-68 | S8E486_9LAMI; Ethylene response factor 2 (Fragment) | ||||
STRING | Migut.D00130.1.p | 9e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-28 | ERF family protein |