PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40054
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 87aa    MW: 9772.24 Da    PI: 11.4549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40054genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-125083239
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgta 39
                               +y+GVr+++ +gr++AeIrdp     +  r +lg+f+ta
  Tp57577_TGAC_v2_mRNA40054 50 RYRGVRRRP-WGRYAAEIRDPA----SkERRWLGTFDTA 83
                               69*******.**********83....25999******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-145083No hitNo description
SuperFamilySSF541712.68E-115083IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-175084IPR001471AP2/ERF domain
PfamPF008473.6E-65082IPR001471AP2/ERF domain
SMARTSM003804.7E-55086IPR001471AP2/ERF domain
PROSITE profilePS5103215.8575086IPR001471AP2/ERF domain
PRINTSPR003672.8E-75162IPR001471AP2/ERF domain
PRINTSPR003672.8E-77386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MEEALHRLNG TSPTVPFPDL LETKKPKPKR TSRDNTTTTT TTTGNGGALR YRGVRRRPWG  60
RYAAEIRDPA SKERRWLGTF DTAXXX*
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40054
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613106.15e-27ethylene-responsive transcription factor ESR2
SwissprotQ9SAD46e-18ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLA0A2K3N7691e-51A0A2K3N769_TRIPR; Ethylene-responsive transcription factor esr2-like protein
STRINGAES960642e-26(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-08ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]