PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11414
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 291aa    MW: 33309.6 Da    PI: 10.5337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11414genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-1961112256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+G+r+++ +g+++AeIrd + ng  +r++lg+f taeeAa a+++a+ +++g+
  Tp57577_TGAC_v2_mRNA11414  61 NYRGIRRRR-WGKYAAEIRDSTRNG--ARIWLGTFQTAEEAAIAYDKAAFRMRGP 112
                                59****777.**********44465..**************************95 PP
2NAM54.25e-1717525950128
                        NAM  50 kvkaeekewyfFskrdkkyatgkrknr.a....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhey 126
                                +v++e + ++fF+k+ k+y++++rk++ +      + +W++tgk+++++  +g + g+kk++v+y    +  k+ekt+Wv+h+y
  Tp57577_TGAC_v2_mRNA11414 175 NVSQEGSATHFFHKAIKAYNSDNRKRQrIfdqdFGDLRWHKTGKTRPIFL-DGIQRGCKKIMVLYitPTNGGKAEKTNWVVHQY 257
                                445566788**********9988777634443333567************.99************6534667778********* PP

                        NAM 127 rl 128
                                ++
  Tp57577_TGAC_v2_mRNA11414 258 HI 259
                                97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.12E-2960120No hitNo description
SuperFamilySSF541711.63E-2261121IPR016177DNA-binding domain
SMARTSM003801.6E-3561125IPR001471AP2/ERF domain
PfamPF008471.1E-1161111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-3061119IPR001471AP2/ERF domain
PROSITE profilePS5103223.0961119IPR001471AP2/ERF domain
PRINTSPR003673.6E-106273IPR001471AP2/ERF domain
PRINTSPR003673.6E-1085101IPR001471AP2/ERF domain
PROSITE profilePS5100513.979122278IPR003441NAC domain
SuperFamilySSF1019414.97E-18178278IPR003441NAC domain
PfamPF023656.9E-6183259IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
LNLKETMALI SQTELPFNEN DSQDMVIYQI LNEANELSNT MVQQERRQNG LELSKNVKKK  60
NYRGIRRRRW GKYAAEIRDS TRNGARIWLG TFQTAEEAAI AYDKAAFRMR GPKALLNFPY  120
EFASIQLTST SKRDLSSGKI NNKDSESSAS NSSCSIAFAT SSTTSAQSQS TIVTNVSQEG  180
SATHFFHKAI KAYNSDNRKR QRIFDQDFGD LRWHKTGKTR PIFLDGIQRG CKKIMVLYIT  240
PTNGGKAEKT NWVVHQYHIG RKENEKEGEY VISKIFYRQQ QSKLGIKKKI R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2860119160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LDZ41e-99A0A2K3LDZ4_TRIPR; Pathogenesis-related genes transcriptional activator pti5-like protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-49NAC family protein